Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H13
         (362 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical pr...    29   0.75 
AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein...    29   0.75 
Z81544-4|CAB04431.2|  329|Caenorhabditis elegans Hypothetical pr...    28   2.3  
Z36753-10|CAA85341.1|  708|Caenorhabditis elegans Hypothetical p...    28   2.3  
AF002198-5|AAF99934.2|  329|Caenorhabditis elegans Serpentine re...    27   3.0  
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z54282-1|CAA91056.2| 1201|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U88179-1|AAB52661.3|  216|Caenorhabditis elegans Hypothetical pr...    26   7.0  
AF078785-6|AAC27094.1|  337|Caenorhabditis elegans Serpentine re...    26   9.3  

>Z79598-3|CAB01865.1|  680|Caenorhabditis elegans Hypothetical
           protein C44H4.3 protein.
          Length = 680

 Score = 29.5 bits (63), Expect = 0.75
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 103 PYLEPRPIRPLVCLN--ANTSFSMTGKPRLVPNTSS 2
           P  +PRPIRP+ C N    T+ + T    L P T++
Sbjct: 446 PKAQPRPIRPVCCSNEITTTTTTTTTTTTLAPTTTT 481


>AJ242473-1|CAB43345.1|  680|Caenorhabditis elegans SYM-1 protein
           protein.
          Length = 680

 Score = 29.5 bits (63), Expect = 0.75
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 103 PYLEPRPIRPLVCLN--ANTSFSMTGKPRLVPNTSS 2
           P  +PRPIRP+ C N    T+ + T    L P T++
Sbjct: 446 PKAQPRPIRPVCCSNEITTTTTTTTTTTTLAPTTTT 481


>Z81544-4|CAB04431.2|  329|Caenorhabditis elegans Hypothetical
           protein F49C5.2 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 30  FPVIEKDVFAFKQTNGRIGLGSKYGLMAFCTSKLEVCYFEVNGFYLG 170
           FP+     + F  TN  IG      L +F     E C++  N  YLG
Sbjct: 125 FPLWHMKKYRFNPTNFGIGFSLLIALFSFAVLLPEGCHYLFNRDYLG 171


>Z36753-10|CAA85341.1|  708|Caenorhabditis elegans Hypothetical
           protein T09A5.12 protein.
          Length = 708

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = +3

Query: 186 LGDGNNEPYFDYRLPNGKICTSESEYGNAYSLARSCPKVQTPEHSHHQMHAALPPAC 356
           L    + P + YRLP       ++EYGN +   R    +  P     + H    PAC
Sbjct: 143 LDTSGSAPKYVYRLP-------KAEYGNKFDENRPASNMYVPAQEPPKQHFTTVPAC 192


>AF002198-5|AAF99934.2|  329|Caenorhabditis elegans Serpentine
           receptor, class x protein122 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 30  FPVIEKDVFAFKQTNGRIGLGSKYGLMAFCTSKLEVCYFEVNGFYLG 170
           FP+     + F  TN  IG+     + +F     E C++  N  YLG
Sbjct: 125 FPIWHMKKYRFNPTNIGIGVALLIAVFSFAVLLPEGCHYLFNRDYLG 171


>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical protein
            F29G6.3b protein.
          Length = 1785

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 294  PKVQTPEHSHHQMHAALPPA 353
            PK     H H+Q H+ LPP+
Sbjct: 1223 PKEHQSRHEHYQSHSYLPPS 1242


>Z54282-1|CAA91056.2| 1201|Caenorhabditis elegans Hypothetical
           protein F52E10.1 protein.
          Length = 1201

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 133 SSLEVQKAINPYLEPRPIRPLVCLNANTSFSMTGKPRLVPN 11
           + +E+QKA  PYL    +  L  LN  + +  TG    +P+
Sbjct: 176 TDIEIQKAETPYLHRNVLNVLGSLNRASQYYCTGGYVFLPS 216


>U88179-1|AAB52661.3|  216|Caenorhabditis elegans Hypothetical
           protein R57.2 protein.
          Length = 216

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
 Frame = +3

Query: 222 RLPNGKICTSESEY------GNAYSLARSCPKVQTPEHSHH 326
           R P GK  TSE  Y      G A  L  SC ++  PE  HH
Sbjct: 75  RKPLGKCGTSEVNYQPCTSKGIANKLFLSCCQLYVPEECHH 115


>AF078785-6|AAC27094.1|  337|Caenorhabditis elegans Serpentine
           receptor, class x protein121 protein.
          Length = 337

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 30  FPVIEKDVFAFKQTNGRIGLGSKYGLMAFCTSKLEVCYFEVNGFYLG 170
           FP+     + F  TN  IG+     + +F     E C++  +  YLG
Sbjct: 125 FPIWHMKKYRFNPTNIGIGVALLIAIFSFAVLLPEGCHYIFDRDYLG 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,290,710
Number of Sequences: 27780
Number of extensions: 158031
Number of successful extensions: 429
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)