Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_H12
(224 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 84 2e-18
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 57 4e-10
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 47 3e-07
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 47 3e-07
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 46 9e-07
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 44 4e-06
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 42 8e-06
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 32 0.009
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 27 0.44
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 26 0.58
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 25 1.0
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 25 1.0
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 1.0
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 25 1.0
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 23 4.1
SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces... 22 9.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 22 9.5
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 84.2 bits (199), Expect = 2e-18
Identities = 40/65 (61%), Positives = 50/65 (76%)
Frame = +1
Query: 28 QPQILLLREGTDQTQCKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDL 207
Q +++L+EGTD +Q + QL+SNINAC V D +RTTLGP G DKL+VD G+ VISND
Sbjct: 7 QIPVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDG 66
Query: 208 ATIMK 222
ATIMK
Sbjct: 67 ATIMK 71
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 56.8 bits (131), Expect = 4e-10
Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 2/55 (3%)
Frame = +1
Query: 64 QTQCKPQLI--SNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDLATIMK 222
Q + KPQ + SNI A + V DA+RT+LGP+GMDK+I G+ +++ND ATI+K
Sbjct: 12 QDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILK 66
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 47.2 bits (107), Expect = 3e-07
Identities = 20/43 (46%), Positives = 32/43 (74%)
Frame = +1
Query: 91 SNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDLATIM 219
S+I A + V + VRT+LGPRG+DK+++ G+ ++ND ATI+
Sbjct: 38 SHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATIL 80
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 47.2 bits (107), Expect = 3e-07
Identities = 24/64 (37%), Positives = 37/64 (57%)
Frame = +1
Query: 31 PQILLLREGTDQTQCKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDLA 210
P ++ G Q K Q+ SNI A + V D +RT LGPR M K+++D G +++ND
Sbjct: 4 PVFVMNTNGNRQVGHKAQM-SNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGH 62
Query: 211 TIMK 222
I++
Sbjct: 63 AILR 66
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 45.6 bits (103), Expect = 9e-07
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +1
Query: 43 LLREGTDQTQ-CKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDLATIM 219
L REG Q + +I N NA + + + RT+LGP G +K++V+H + ++ND ATI+
Sbjct: 13 LFREGYRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATII 72
Query: 220 K 222
+
Sbjct: 73 R 73
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 43.6 bits (98), Expect = 4e-06
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +1
Query: 19 IKMQPQILLLREGTDQTQCKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDH-SGKAVI 195
+ + P + G + +L S + A V D V++TLGP+GMDK++ + SG V+
Sbjct: 1 MSLNPHQIFNESGIQERGENARLSSFVGAIA-VGDLVKSTLGPKGMDKILQSNSSGDIVV 59
Query: 196 SNDLATIMK 222
+ND ATI+K
Sbjct: 60 TNDGATILK 68
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 42.3 bits (95), Expect = 8e-06
Identities = 17/42 (40%), Positives = 29/42 (69%)
Frame = +1
Query: 94 NINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDLATIM 219
N+ A + + V+++LGP G+DK++VD G ++ND ATI+
Sbjct: 26 NVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATIL 67
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 32.3 bits (70), Expect = 0.009
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 43 LLREGTDQTQCKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISND 204
LL + Q L NI+A + D +++ LGP G K++VD +G ++ D
Sbjct: 4 LLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKD 57
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 26.6 bits (56), Expect = 0.44
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 4 WTRRNIKMQPQILLLREGTDQTQCKPQLISNINACQ 111
W R+N P+ L LR D QC Q ISN++ Q
Sbjct: 730 WARKN--WLPKKLHLRRVNDTMQCVSQKISNLDKDQ 763
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 26.2 bits (55), Expect = 0.58
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 124 AVRTTLGPRGMDKLIVDHSGKAVISNDLATIMK 222
AV TLGP+G + LI G I+ D T+ +
Sbjct: 57 AVSVTLGPKGRNVLIDQPFGSPKITKDGVTVAR 89
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 25.4 bits (53), Expect = 1.0
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 19 IKMQPQILLLREGTDQTQCKPQLISNINACQLVVDAVRTTL 141
I+ IL+L G+D+ + + +++C+ + D+V TTL
Sbjct: 675 IESAKNILILEMGSDKQFLRRAAVQLLDSCKHLPDSVITTL 715
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.4 bits (53), Expect = 1.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 158 SMPLGPSVVRTASTTSWQALM 96
S+PL PSVV+ ST S Q L+
Sbjct: 211 SIPLAPSVVQVLSTFSAQELL 231
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.4 bits (53), Expect = 1.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 200 FEITALPL*STISLSMPLGPSVV 132
F+I L S+I+ S+PL PS++
Sbjct: 252 FQIAGFMLLSSIAASLPLSPSII 274
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 25.4 bits (53), Expect = 1.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 159 VHAPWAKCCADSINNQLAGIDVRYKLRL 76
VH+P AK + + N +GID+ ++L
Sbjct: 287 VHSPEAKVTENDVENVQSGIDIEKTIQL 314
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 6 DEEKYQNATTNPITERGH*SNPMQASAYI 92
+EEKY+ NP S P+ A YI
Sbjct: 349 EEEKYKLPHPNPFYNSKEESEPLAAHGYI 377
>SPAC589.08c |dam1||DASH complex subunit Dam1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 155
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3
Query: 12 EKYQNATTNPI 44
EKYQ AT NP+
Sbjct: 2 EKYQKATQNPL 12
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -1
Query: 191 TALPL*STISLSMPLGPSVVRTASTTS 111
T++P + SLS P+ P+V T+++++
Sbjct: 233 TSIPTGGSSSLSTPITPTVPPTSTSST 259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 947,655
Number of Sequences: 5004
Number of extensions: 15626
Number of successful extensions: 38
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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