Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_H12
(224 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995... 96 4e-21
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 51 1e-07
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806... 49 4e-07
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 48 1e-06
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832... 45 1e-05
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 44 2e-05
10_08_0620 - 19321612-19323237 40 2e-04
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 40 3e-04
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 40 4e-04
05_01_0337 - 2658647-2658722,2658797-2658915,2658995-2659102,265... 37 0.003
02_01_0024 + 159595-159801,159892-160017,160201-160338,160431-16... 29 0.51
12_01_1011 + 10292709-10292765,10293003-10293156,10294062-102941... 29 0.67
03_01_0305 - 2383187-2383298,2383606-2383684,2383762-2383867,238... 29 0.67
03_06_0760 - 36067752-36068045,36068260-36068711,36069263-360695... 28 0.88
05_06_0240 - 26629218-26629323,26629412-26629490,26629656-266297... 27 2.0
09_02_0256 - 6350559-6350573,6351025-6351762 27 2.7
02_04_0554 - 23831212-23832163,23833173-23833438,23833694-238337... 27 2.7
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548... 26 3.6
06_01_0097 - 810283-810296,810398-810521,810974-811066,811144-81... 26 3.6
01_06_1588 + 38474698-38477169 26 4.7
05_06_0192 - 26273599-26274543 25 6.2
01_01_0189 - 1640581-1640832,1640936-1641132,1641243-1641608,164... 25 6.2
11_06_0064 + 19733643-19734056 25 8.2
10_07_0168 + 13758189-13758418,13758888-13759041,13760576-137610... 25 8.2
06_03_0545 + 21983666-21986086 25 8.2
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 25 8.2
>06_03_1193 -
28298656-28298754,28299303-28299377,28299456-28299544,
28299679-28299760,28300385-28300474,28300557-28300655,
28300733-28300852,28300968-28301084,28301174-28301309,
28301415-28301584,28301744-28301947,28302032-28302157,
28302841-28303101,28303215-28303229
Length = 560
Score = 95.9 bits (228), Expect = 4e-21
Identities = 45/66 (68%), Positives = 53/66 (80%)
Frame = +1
Query: 25 MQPQILLLREGTDQTQCKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISND 204
MQPQI+LL+EGTD +Q + Q++SNINAC +V D VRTTLGPRGMDKLI D G ISND
Sbjct: 5 MQPQIILLKEGTDTSQGRAQVVSNINACTVVADTVRTTLGPRGMDKLIHDDKGGTTISND 64
Query: 205 LATIMK 222
ATIM+
Sbjct: 65 GATIMR 70
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 51.2 bits (117), Expect = 1e-07
Identities = 24/42 (57%), Positives = 31/42 (73%)
Frame = +1
Query: 94 NINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDLATIM 219
NI A + V DAVRT+LGPRGMDK+I + +I+ND ATI+
Sbjct: 31 NIAAARAVADAVRTSLGPRGMDKMISSGEQEVIITNDGATIL 72
>03_06_0362 +
33379489-33379624,33380161-33380423,33380524-33380670,
33380753-33380914,33381681-33381758,33382329-33382462,
33382702-33382774,33382852-33382929,33383002-33383124,
33383223-33383317,33383723-33383932,33384115-33384172,
33384268-33384333
Length = 540
Score = 49.2 bits (112), Expect = 4e-07
Identities = 19/45 (42%), Positives = 33/45 (73%)
Frame = +1
Query: 85 LISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDLATIM 219
++ NI+AC+ + RT+LGP GM+K++++H K ++ND ATI+
Sbjct: 24 VLKNIDACRELSAITRTSLGPNGMNKMVINHLDKLFVTNDAATIV 68
>06_03_0353 +
19810945-19810975,19811308-19811369,19811741-19811813,
19813292-19813359,19813496-19813565,19813908-19813976,
19814065-19814136,19814247-19814320,19814420-19814697,
19814804-19815188,19815268-19815393,19815583-19815687,
19815986-19815994,19817040-19817114,19817202-19817390
Length = 561
Score = 48.0 bits (109), Expect = 1e-06
Identities = 23/62 (37%), Positives = 38/62 (61%)
Frame = +1
Query: 37 ILLLREGTDQTQCKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDLATI 216
+L+L++ + +NI A + V D +RTTLGPR M K+++D SG V++ND I
Sbjct: 7 VLVLKDSLKRESGTKVHHANIQAAKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAI 66
Query: 217 MK 222
++
Sbjct: 67 LR 68
>02_02_0253 -
8325437-8325628,8325705-8325779,8325933-8326037,
8326249-8326374,8326451-8326835,8326931-8327208,
8327294-8327367,8327476-8327547,8327637-8327705,
8340132-8340201,8340806-8340873,8341571-8341643,
8341807-8341868,8342168-8342198
Length = 559
Score = 44.8 bits (101), Expect = 1e-05
Identities = 21/62 (33%), Positives = 38/62 (61%)
Frame = +1
Query: 37 ILLLREGTDQTQCKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDLATI 216
+L+L++ + +NI A + V D +RTTLGP+ M K+++D +G V++ND I
Sbjct: 7 VLVLKDSLKRESGTKVHHANIQAAKAVADIIRTTLGPQSMLKMLLDAAGGIVVTNDGNCI 66
Query: 217 MK 222
++
Sbjct: 67 LR 68
>06_03_0477 -
21250811-21250981,21251261-21251374,21251447-21251613,
21252051-21252153,21252315-21252367,21252438-21252570,
21252835-21253183,21253685-21254003,21254519-21254717
Length = 535
Score = 43.6 bits (98), Expect = 2e-05
Identities = 20/44 (45%), Positives = 30/44 (68%)
Frame = +1
Query: 91 SNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDLATIMK 222
+NI A + V +RT+LGP+GMDK++ G I+ND ATI++
Sbjct: 32 ANIAAGKAVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILE 75
>10_08_0620 - 19321612-19323237
Length = 541
Score = 40.3 bits (90), Expect = 2e-04
Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Frame = +1
Query: 94 NINACQLVVDAVRTTLGPRGMDKLIVDHSG----KAVISNDLATIM 219
NI A + V A RT+LGPRGMDK+I S +I+ND ATI+
Sbjct: 31 NIAAGRAVAAAARTSLGPRGMDKMISSSSSGGDQAVIITNDGATIL 76
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 39.9 bits (89), Expect = 3e-04
Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Frame = +1
Query: 40 LLLREGTDQTQCKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHS-GKAV-ISNDLAT 213
LL + T++ + ++ S + + D V+TTLGP+GMDK++ G++V ++ND AT
Sbjct: 5 LLKDDATEEKGERARMASFVGG-MAISDLVKTTLGPKGMDKILQSTGRGRSVTVTNDGAT 63
Query: 214 IMK 222
I+K
Sbjct: 64 ILK 66
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 39.5 bits (88), Expect = 4e-04
Identities = 19/38 (50%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
Frame = +1
Query: 115 VVDAVRTTLGPRGMDKLIVDHS-GKAV-ISNDLATIMK 222
+ D V+TTLGP+GMDK++ G++V ++ND ATI+K
Sbjct: 28 IADLVKTTLGPKGMDKILQSTGRGRSVTVTNDGATILK 65
>05_01_0337 -
2658647-2658722,2658797-2658915,2658995-2659102,
2659187-2659255,2659561-2659655,2659740-2659944,
2660125-2660211,2660291-2660405,2660696-2660802,
2661054-2661146,2661243-2661290,2661345-2661544,
2661993-2662128,2662228-2662291,2662779-2662912
Length = 551
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +1
Query: 94 NINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDLATIMK 222
NINA + + D ++T LGP+G K++V +G ++ D T++K
Sbjct: 22 NINAAKGLQDVLKTNLGPKGTIKMLVGGAGDIKLTKDGNTLLK 64
>02_01_0024 +
159595-159801,159892-160017,160201-160338,160431-160526,
160958-161200,161249-161537,161612-161781,161975-162052,
162156-162227,162345-162449,162555-162647,162737-162829,
163109-163235,163317-163330
Length = 616
Score = 29.1 bits (62), Expect = 0.51
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 100 NACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDLATIMK 222
N + D V TLGP+G + ++ G I ND T+ K
Sbjct: 70 NGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAK 110
>12_01_1011 +
10292709-10292765,10293003-10293156,10294062-10294183,
10294288-10294495,10294644-10294789,10294920-10295226,
10295666-10296117,10296388-10296678
Length = 578
Score = 28.7 bits (61), Expect = 0.67
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 115 VVDAVRTTLGPRGMDKLIVDHSGKAVISNDLATIMK 222
+ +AV TLGPRG + +++D G + ND TI +
Sbjct: 59 LANAVGVTLGPRGRN-VVLDEYGSPKVVNDGVTIAR 93
>03_01_0305 -
2383187-2383298,2383606-2383684,2383762-2383867,
2383941-2384044,2384141-2384240,2384533-2384628,
2384724-2384801,2385355-2385423,2385511-2385591,
2385670-2385759,2385859-2385945,2386022-2386126,
2386591-2386686,2386796-2386971,2387225-2387384,
2387898-2388029,2388236-2388260,2389023-2389174
Length = 615
Score = 28.7 bits (61), Expect = 0.67
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 115 VVDAVRTTLGPRGMDKLIVDHSGKAVISNDLATIMK 222
+ DAV+ T+GP+G +I G ++ D T+ K
Sbjct: 92 LADAVKVTMGPKGRTVVIEQSFGAPKVTKDGVTVAK 127
>03_06_0760 -
36067752-36068045,36068260-36068711,36069263-36069569,
36069719-36069864,36069989-36070196,36070339-36070460,
36070621-36070789,36070875-36070931
Length = 584
Score = 28.3 bits (60), Expect = 0.88
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 124 AVRTTLGPRGMDKLIVDHSGKAVISNDLATIMK 222
AV TLGPRG + +++D G + ND TI +
Sbjct: 67 AVAVTLGPRGRN-VVLDEFGSPKVVNDGVTIAR 98
>05_06_0240 -
26629218-26629323,26629412-26629490,26629656-26629761,
26629844-26629947,26630069-26630168,26630256-26630351,
26630464-26630541,26630603-26630671,26630766-26630846,
26630879-26630935,26631016-26631105,26631192-26631278,
26631690-26631794,26631899-26631994,26632222-26632397,
26632847-26633006,26633151-26633600
Length = 679
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Frame = +1
Query: 115 VVDAVRTTLGPRGMDKLIVDHSGKA-VISNDLATIMK 222
+ DAV+ T+GP+G + +I++ S +A ++ D T+ K
Sbjct: 139 LADAVKVTMGPKGRN-VIIERSHRAPKVTKDGVTVAK 174
>09_02_0256 - 6350559-6350573,6351025-6351762
Length = 250
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -3
Query: 141 KCCADSI-NNQLAGIDVRYKLRLALGLIS 58
+CC+D + ++ LAG DV + R LG+++
Sbjct: 222 ECCSDDVMDSLLAGFDVSSEPRSVLGMVN 250
>02_04_0554 -
23831212-23832163,23833173-23833438,23833694-23833748,
23834384-23834436,23834512-23834588,23834730-23834862,
23834958-23835098,23835840-23835960,23836137-23836242,
23836523-23836592,23836716-23836885,23837253-23837277,
23837662-23837777,23838926-23839217
Length = 858
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +1
Query: 64 QTQCKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAV 192
Q + L AC +++ + T+G G + +V H+G+A+
Sbjct: 307 QQAYRAPLYEGSTACVVIIRGNQITVGNVGDSRCVVSHNGQAI 349
>06_03_1508 -
30653967-30654245,30654342-30654631,30654773-30654841,
30654854-30654921,30655016-30655492,30655578-30655874,
30655974-30656824,30656917-30656990,30657270-30657292,
30657709-30657772,30658098-30658370,30658511-30658587,
30658686-30658912
Length = 1022
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +2
Query: 23 KCNHKSYY*E--RALIKPNASLSLYLTSMPANWLL 121
+ N YY + ++KPNA++++ +P W+L
Sbjct: 671 RVNPPDYYIDILEGIVKPNANVAVNAKDLPLRWML 705
>06_01_0097 -
810283-810296,810398-810521,810974-811066,811144-811236,
811410-811514,811661-811732,811857-811934,812210-812379,
812507-812741,812832-813074,813243-813338,813445-813582,
814014-814139,814235-814453
Length = 601
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 115 VVDAVRTTLGPRGMDKLIVDHSGKAVISNDLATIMK 222
+ D V TLGP+G + ++ G I ND T+ +
Sbjct: 79 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAR 114
>01_06_1588 + 38474698-38477169
Length = 823
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 187 LCRYDPLSACPCPLGQV 137
LC Y P AC CP G V
Sbjct: 299 LCVYTPRPACSCPPGYV 315
>05_06_0192 - 26273599-26274543
Length = 314
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 79 ACIGFDQCPLSVIGFV 32
AC+GF QC L+ GF+
Sbjct: 132 ACVGFSQCLLNFKGFL 147
>01_01_0189 -
1640581-1640832,1640936-1641132,1641243-1641608,
1641826-1642224,1642313-1642719,1642814-1642941
Length = 582
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 31 PQILLLREGTDQTQCKPQLISNINACQLVVDAVRTTLGPRGMDK 162
P++LL+ E D+ K LIS + ++ +++RT + DK
Sbjct: 424 PKLLLVPEFRDEEDEKDDLISAVQFLYILEESIRTFMAFLRADK 467
>11_06_0064 + 19733643-19734056
Length = 137
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 105 LPTGC*CCPHNTWPKGHGQADSG 173
LP GC CC + W HG + +G
Sbjct: 48 LPPGCSCCLSSLW---HGSSTAG 67
>10_07_0168 +
13758189-13758418,13758888-13759041,13760576-13761042,
13761361-13761478,13761566-13761622,13761906-13762082,
13762225-13762365,13762458-13762531,13764583-13764738,
13764822-13764895,13764992-13765068
Length = 574
Score = 25.0 bits (52), Expect = 8.2
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -2
Query: 169 LSACPCPLGQVLC 131
L++CPCP+ +LC
Sbjct: 496 LTSCPCPVEYILC 508
>06_03_0545 + 21983666-21986086
Length = 806
Score = 25.0 bits (52), Expect = 8.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -2
Query: 187 LCRYDPLSACPCPLG 143
+C Y P+ AC CP G
Sbjct: 289 ICVYTPVPACACPPG 303
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 25.0 bits (52), Expect = 8.2
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 49 REGTDQTQCKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDH 177
R+GT +Q PQ + N ++ +++D VR TL DK+ V +
Sbjct: 213 RKGTGSSQ--PQDLGNEHSKWMILDRVRFTLDGLECDKIGVGY 253
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,414,652
Number of Sequences: 37544
Number of extensions: 111415
Number of successful extensions: 287
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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