Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H12
         (224 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067947-11|AAO25994.1|  455|Caenorhabditis elegans Hypothetical...    95   8e-21
AF067947-10|AAC19232.2|  535|Caenorhabditis elegans Hypothetical...    95   8e-21
AC024136-4|AAF35963.3|  543|Caenorhabditis elegans Hypothetical ...    57   2e-09
Z49068-8|CAA88861.1|  540|Caenorhabditis elegans Hypothetical pr...    56   3e-09
U25697-1|AAA92842.1|  540|Caenorhabditis elegans CCT-4 protein.        56   3e-09
Z35599-3|CAA84660.1|  542|Caenorhabditis elegans Hypothetical pr...    49   5e-07
Z32840-7|CAA83681.1|  542|Caenorhabditis elegans Hypothetical pr...    49   5e-07
U25698-1|AAA92843.1|  542|Caenorhabditis elegans CCT-5 protein.        49   5e-07
AC024827-1|AAF60806.2|  581|Caenorhabditis elegans Hypothetical ...    48   7e-07
Z66500-12|CAA91308.1|  549|Caenorhabditis elegans Hypothetical p...    46   3e-06
U07941-1|AAB05072.1|  549|Caenorhabditis elegans CCT-1 protein.        46   3e-06
Z68318-10|CAA92697.1|  529|Caenorhabditis elegans Hypothetical p...    40   2e-04
U25632-1|AAA93233.1|  529|Caenorhabditis elegans CCT-2 protein.        40   2e-04
AL031268-2|CAA20331.1|  529|Caenorhabditis elegans Hypothetical ...    40   2e-04
L36035-1|AAA28077.1|  568|Caenorhabditis elegans HSP60 protein.        31   0.15 
AC084153-6|AAK84594.1|  568|Caenorhabditis elegans Heat shock pr...    31   0.15 
Z82259-6|CAB97264.1|  339|Caenorhabditis elegans Hypothetical pr...    27   1.4  
AC006632-5|AAK85474.1|  202|Caenorhabditis elegans Hypothetical ...    25   9.6  

>AF067947-11|AAO25994.1|  455|Caenorhabditis elegans Hypothetical
           protein T10B5.5b protein.
          Length = 455

 Score = 94.7 bits (225), Expect = 8e-21
 Identities = 43/66 (65%), Positives = 54/66 (81%)
 Frame = +1

Query: 25  MQPQILLLREGTDQTQCKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISND 204
           M+P I+LL++GT+  Q K Q+ISNINACQ+V D++RTTLGPRG+DKLIVD  G   ISND
Sbjct: 2   MRPPIILLKDGTENKQGKGQIISNINACQVVADSIRTTLGPRGLDKLIVDSKGATTISND 61

Query: 205 LATIMK 222
            ATI+K
Sbjct: 62  GATILK 67


>AF067947-10|AAC19232.2|  535|Caenorhabditis elegans Hypothetical
           protein T10B5.5a protein.
          Length = 535

 Score = 94.7 bits (225), Expect = 8e-21
 Identities = 43/66 (65%), Positives = 54/66 (81%)
 Frame = +1

Query: 25  MQPQILLLREGTDQTQCKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISND 204
           M+P I+LL++GT+  Q K Q+ISNINACQ+V D++RTTLGPRG+DKLIVD  G   ISND
Sbjct: 2   MRPPIILLKDGTENKQGKGQIISNINACQVVADSIRTTLGPRGLDKLIVDSKGATTISND 61

Query: 205 LATIMK 222
            ATI+K
Sbjct: 62  GATILK 67


>AC024136-4|AAF35963.3|  543|Caenorhabditis elegans Hypothetical
           protein F54A3.3 protein.
          Length = 543

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 26/65 (40%), Positives = 41/65 (63%)
 Frame = +1

Query: 28  QPQILLLREGTDQTQCKPQLISNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDL 207
           Q  I++L +GT +       I NINAC+ + D +RT+LGPR M K+++D  G  V++ND 
Sbjct: 6   QQPIIVLSQGTKRESGHQVQIGNINACKTIADVIRTSLGPRAMLKMLMDPMGGIVMTNDG 65

Query: 208 ATIMK 222
             I++
Sbjct: 66  NAILR 70


>Z49068-8|CAA88861.1|  540|Caenorhabditis elegans Hypothetical
           protein K01C8.10 protein.
          Length = 540

 Score = 56.0 bits (129), Expect = 3e-09
 Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
 Frame = +1

Query: 49  REGTDQTQCKPQLI--SNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDLATIM 219
           RE   + + KP+ +  SNI A + V DAVRT+LGPRGMDK+I   +G   I+ND ATI+
Sbjct: 19  RERNFKDKDKPESVRNSNIVAAKAVADAVRTSLGPRGMDKMIQSGNGDVTITNDGATIL 77


>U25697-1|AAA92842.1|  540|Caenorhabditis elegans CCT-4 protein.
          Length = 540

 Score = 56.0 bits (129), Expect = 3e-09
 Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
 Frame = +1

Query: 49  REGTDQTQCKPQLI--SNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDLATIM 219
           RE   + + KP+ +  SNI A + V DAVRT+LGPRGMDK+I   +G   I+ND ATI+
Sbjct: 19  RERNFKDKDKPESVRNSNIVAAKAVADAVRTSLGPRGMDKMIQSGNGDVTITNDGATIL 77


>Z35599-3|CAA84660.1|  542|Caenorhabditis elegans Hypothetical
           protein C07G2.3a protein.
          Length = 542

 Score = 48.8 bits (111), Expect = 5e-07
 Identities = 22/44 (50%), Positives = 32/44 (72%)
 Frame = +1

Query: 91  SNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDLATIMK 222
           S+I A + V + +RT+LGPRG+DK++V   G   I+ND ATIM+
Sbjct: 37  SHILAARAVANTLRTSLGPRGLDKMLVSPDGDVTITNDGATIME 80


>Z32840-7|CAA83681.1|  542|Caenorhabditis elegans Hypothetical
           protein C07G2.3a protein.
          Length = 542

 Score = 48.8 bits (111), Expect = 5e-07
 Identities = 22/44 (50%), Positives = 32/44 (72%)
 Frame = +1

Query: 91  SNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDLATIMK 222
           S+I A + V + +RT+LGPRG+DK++V   G   I+ND ATIM+
Sbjct: 37  SHILAARAVANTLRTSLGPRGLDKMLVSPDGDVTITNDGATIME 80


>U25698-1|AAA92843.1|  542|Caenorhabditis elegans CCT-5 protein.
          Length = 542

 Score = 48.8 bits (111), Expect = 5e-07
 Identities = 22/44 (50%), Positives = 32/44 (72%)
 Frame = +1

Query: 91  SNINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDLATIMK 222
           S+I A + V + +RT+LGPRG+DK++V   G   I+ND ATIM+
Sbjct: 37  SHILAARAVANTLRTSLGPRGLDKMLVSPDGDVTITNDGATIME 80


>AC024827-1|AAF60806.2|  581|Caenorhabditis elegans Hypothetical
           protein Y55F3AR.3 protein.
          Length = 581

 Score = 48.4 bits (110), Expect = 7e-07
 Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
 Frame = +1

Query: 46  LREGTDQTQCKPQLIS-NINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDLATIMK 222
           ++EG    +   + +  NI AC  +   +R+  GP GM+K++++H  K  ++ND ATI+K
Sbjct: 14  MKEGAQHFKGTDEAVQRNIEACTELASQIRSAYGPNGMNKMVINHIEKLFVTNDAATILK 73


>Z66500-12|CAA91308.1|  549|Caenorhabditis elegans Hypothetical
           protein T05C12.7 protein.
          Length = 549

 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 18/43 (41%), Positives = 31/43 (72%)
 Frame = +1

Query: 94  NINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDLATIMK 222
           N+ A   + + V+++LGP G+DK++VD  G  +++ND ATI+K
Sbjct: 25  NVTAAVAIANIVKSSLGPVGLDKMLVDDVGDVIVTNDGATILK 67


>U07941-1|AAB05072.1|  549|Caenorhabditis elegans CCT-1 protein.
          Length = 549

 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 18/43 (41%), Positives = 31/43 (72%)
 Frame = +1

Query: 94  NINACQLVVDAVRTTLGPRGMDKLIVDHSGKAVISNDLATIMK 222
           N+ A   + + V+++LGP G+DK++VD  G  +++ND ATI+K
Sbjct: 25  NVTAAVAIANIVKSSLGPVGLDKMLVDDVGDVIVTNDGATILK 67


>Z68318-10|CAA92697.1|  529|Caenorhabditis elegans Hypothetical
           protein T21B10.7 protein.
          Length = 529

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 19/66 (28%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
 Frame = +1

Query: 37  ILLLREGTDQTQCKPQLISNINACQLVVDAVRTTLGPRGMDKLIV----DHSGKAVISND 204
           + +L++   + + +   +S+      + D V++TLGP+GMDK+++    + +G   ++ND
Sbjct: 4   VQILKDNAQEERGESARLSSFVGAIAIGDLVKSTLGPKGMDKILISGNPESAGGIKVTND 63

Query: 205 LATIMK 222
            ATI+K
Sbjct: 64  GATILK 69


>U25632-1|AAA93233.1|  529|Caenorhabditis elegans CCT-2 protein.
          Length = 529

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 19/66 (28%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
 Frame = +1

Query: 37  ILLLREGTDQTQCKPQLISNINACQLVVDAVRTTLGPRGMDKLIV----DHSGKAVISND 204
           + +L++   + + +   +S+      + D V++TLGP+GMDK+++    + +G   ++ND
Sbjct: 4   VQILKDNAQEERGESARLSSFVGAIAIGDLVKSTLGPKGMDKILISGNPESAGGIKVTND 63

Query: 205 LATIMK 222
            ATI+K
Sbjct: 64  GATILK 69


>AL031268-2|CAA20331.1|  529|Caenorhabditis elegans Hypothetical
           protein T21B10.7 protein.
          Length = 529

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 19/66 (28%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
 Frame = +1

Query: 37  ILLLREGTDQTQCKPQLISNINACQLVVDAVRTTLGPRGMDKLIV----DHSGKAVISND 204
           + +L++   + + +   +S+      + D V++TLGP+GMDK+++    + +G   ++ND
Sbjct: 4   VQILKDNAQEERGESARLSSFVGAIAIGDLVKSTLGPKGMDKILISGNPESAGGIKVTND 63

Query: 205 LATIMK 222
            ATI+K
Sbjct: 64  GATILK 69


>L36035-1|AAA28077.1|  568|Caenorhabditis elegans HSP60 protein.
          Length = 568

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 112 LVVDAVRTTLGPRGMDKLIVDHSGKAVISNDLATIMK 222
           L+ DAV  T+GP+G + +I    G   I+ D  T+ K
Sbjct: 37  LLADAVSVTMGPKGRNVIIEQSWGSPKITKDGVTVAK 73


>AC084153-6|AAK84594.1|  568|Caenorhabditis elegans Heat shock
           protein protein 60 protein.
          Length = 568

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 112 LVVDAVRTTLGPRGMDKLIVDHSGKAVISNDLATIMK 222
           L+ DAV  T+GP+G + +I    G   I+ D  T+ K
Sbjct: 37  LLADAVSVTMGPKGRNVIIEQSWGSPKITKDGVTVAK 73


>Z82259-6|CAB97264.1|  339|Caenorhabditis elegans Hypothetical
           protein C28D4.7 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 99  QCLPTGC*CCPHNTWPKGHGQADSGS*RQSSDFK 200
           QC+PT       N W K HGQ D+G  +  S +K
Sbjct: 155 QCMPTSM-----NLWKKMHGQNDAGHIQNVSYYK 183


>AC006632-5|AAK85474.1|  202|Caenorhabditis elegans Hypothetical
           protein F28A10.8 protein.
          Length = 202

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -2

Query: 154 CPLGQVLCG 128
           CPLGQV+CG
Sbjct: 163 CPLGQVVCG 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,320,502
Number of Sequences: 27780
Number of extensions: 93424
Number of successful extensions: 225
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 12,740,198
effective HSP length: 54
effective length of database: 11,240,078
effective search space used: 224801560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)