Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H12
         (224 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   1.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   2.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   4.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   5.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    19   9.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    19   9.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    19   9.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             19   9.9  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 1.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 167 ISLSMPLGPSVVRTASTTSWQALMLDIS 84
           IS    LG  ++RT +  SW +    IS
Sbjct: 137 ISTLYALGAKIIRTPTEASWHSPEAHIS 164


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 2.5
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = +3

Query: 123 CCPHNTWP 146
           CCP++T+P
Sbjct: 233 CCPNDTYP 240


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 19.8 bits (39), Expect = 4.3
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -3

Query: 33  WLHFDISP 10
           WLH D SP
Sbjct: 254 WLHMDASP 261


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 6/12 (50%), Positives = 6/12 (50%)
 Frame = +3

Query: 108 PTGC*CCPHNTW 143
           P GC C    TW
Sbjct: 762 PAGCKCYNDRTW 773


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +1

Query: 16  NIKMQPQILLLREGTDQ 66
           ++ ++ Q+LLLR G ++
Sbjct: 257 SLPLEDQVLLLRAGWNE 273


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -3

Query: 39  DLWLHFDI 16
           DLW+ FD+
Sbjct: 115 DLWVSFDV 122


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +1

Query: 16  NIKMQPQILLLREGTDQ 66
           ++ ++ Q+LLLR G ++
Sbjct: 257 SLPLEDQVLLLRAGWNE 273


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 160  KLIVDHSGK 186
            KLIVDHS +
Sbjct: 1490 KLIVDHSSQ 1498


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,147
Number of Sequences: 438
Number of extensions: 1109
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3533460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)