Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H11
         (192 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    23   5.6  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    23   7.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    23   7.4  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    23   7.4  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    22   9.8  

>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 78  ITDIYIFM*KCKTICTIELLPWMTMI 155
           IT +Y F  +CK  C I++  W T I
Sbjct: 314 ITRVYGFYDECKRRCNIKI--WKTFI 337


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
 Frame = +2

Query: 26  QIVLNIFFYCD--FLFIHTNY 82
           +IV NIF+Y D  FL  H +Y
Sbjct: 119 EIVQNIFYYMDKTFLSHHPDY 139


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 50   YCDFLFIHTNYRYLYFYVEV*NNLYN 127
            YCDF F    +   Y Y+ +   ++N
Sbjct: 3466 YCDFWFFRRTFTTQYAYMIIMTYVFN 3491


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 73  MYKQKITIEKYI*HNLTLCRILAA 2
           +Y Q +TIE+ I + L+ C  L+A
Sbjct: 449 VYSQPVTIEQRIQYVLSNCHCLSA 472


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 10/17 (58%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
 Frame = +1

Query: 85  IFI-FLCRSVKQFVQLS 132
           +FI FLC S K+F+Q+S
Sbjct: 38  LFIPFLCNSGKKFLQIS 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 733,834
Number of Sequences: 5004
Number of extensions: 11393
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)