Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H11
         (192 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0752 - 21241883-21242233,21242336-21242486,21242586-212428...    27   2.1  
09_06_0282 - 22017474-22017484,22017681-22018473,22018918-22019094     25   8.5  

>07_03_0752 -
           21241883-21242233,21242336-21242486,21242586-21242823,
           21242917-21243127,21243214-21243344,21245046-21245931,
           21246087-21246140,21246397-21246461,21246842-21246892,
           21246960-21247029,21247493-21247597
          Length = 770

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 185 LYL*FHLCSSNHRHPW**LNCTNCFTLLHKN 93
           + L  H C S  + P   LNCT+C  LLHK+
Sbjct: 15  IILLLHGCMSG-KSPSGILNCTHCSVLLHKS 44


>09_06_0282 - 22017474-22017484,22017681-22018473,22018918-22019094
          Length = 326

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 143 DDDDYWNTSETRD 181
           DDDDYW+  E  D
Sbjct: 10  DDDDYWDKEEEED 22


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,204,784
Number of Sequences: 37544
Number of extensions: 57797
Number of successful extensions: 87
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 14,793,348
effective HSP length: 43
effective length of database: 13,178,956
effective search space used: 263579120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)