Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H11
         (192 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30662-4|CAA83139.3|  376|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U00042-3|AAM97940.1|  175|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z70268-6|CAA94221.2| 1243|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z70265-4|CAA94203.2| 1243|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer...    25   7.4  
AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer ...    25   7.4  
AF016685-16|AAG24152.2|  328|Caenorhabditis elegans Serpentine r...    25   9.8  

>Z30662-4|CAA83139.3|  376|Caenorhabditis elegans Hypothetical
           protein T16H12.4 protein.
          Length = 376

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -2

Query: 125 CTNCFTLLHKNINIC 81
           C +C TLLH+++++C
Sbjct: 358 CLDCDTLLHESLHVC 372


>U00042-3|AAM97940.1|  175|Caenorhabditis elegans Hypothetical
           protein T04A6.1a protein.
          Length = 175

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 51  IVIFCLYILITDIYIFM*KCKTICTIELLPWMTMITGTQVKLEI 182
           ++ +CL  +I DIY          T +L PW  +ITGT   LE+
Sbjct: 19  VISYCLVGIILDIYFKY-------TPDL-PWTHLITGTSPSLEL 54


>Z70268-6|CAA94221.2| 1243|Caenorhabditis elegans Hypothetical
           protein T21E8.3 protein.
          Length = 1243

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 139 GNSSIVQIVLHFY 101
           G S+IVQ++LHFY
Sbjct: 420 GKSTIVQLLLHFY 432


>Z70265-4|CAA94203.2| 1243|Caenorhabditis elegans Hypothetical
           protein T21E8.3 protein.
          Length = 1243

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 139 GNSSIVQIVLHFY 101
           G S+IVQ++LHFY
Sbjct: 420 GKSTIVQLLLHFY 432


>AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 2, isoform b protein.
          Length = 1051

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 35  LNIFFYCDFLFIHTNYRYLYF 97
           L  FFY +F F  TN+ Y +F
Sbjct: 650 LRYFFYKNFAFTLTNFWYSFF 670


>AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 2, isoform a protein.
          Length = 1222

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 35  LNIFFYCDFLFIHTNYRYLYF 97
           L  FFY +F F  TN+ Y +F
Sbjct: 821 LRYFFYKNFAFTLTNFWYSFF 841


>AF016685-16|AAG24152.2|  328|Caenorhabditis elegans Serpentine
           receptor, class x protein1 protein.
          Length = 328

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 17  AEGQIVLNIFFYCDFLFIHTNYRYLYFYVE 106
           A+  IV  +F  C FL   T   Y YF +E
Sbjct: 141 AKSYIVQYVFPCCSFLVDQTVLSYSYFQIE 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,099,603
Number of Sequences: 27780
Number of extensions: 64194
Number of successful extensions: 200
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 12,740,198
effective HSP length: 43
effective length of database: 11,545,658
effective search space used: 230913160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)