Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_H10
(312 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac... 164 3e-42
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc... 164 3e-42
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|... 40 1e-04
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 32 0.023
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 27 0.65
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 27 0.86
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 26 1.1
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo... 26 1.1
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 2.0
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 24 6.1
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 24 6.1
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 23 8.1
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 23 8.1
>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 164 bits (398), Expect = 3e-42
Identities = 71/101 (70%), Positives = 91/101 (90%)
Frame = +2
Query: 8 AGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGK 187
+G K+R++LGLPV A++NCADN+GAKNLY+++V G RLNRLPAA GDM++ATVKKGK
Sbjct: 9 SGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGK 68
Query: 188 PELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKG 310
P+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KG
Sbjct: 69 PDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKG 109
>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 164 bits (398), Expect = 3e-42
Identities = 71/101 (70%), Positives = 91/101 (90%)
Frame = +2
Query: 8 AGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGK 187
+G K+R++LGLPV A++NCADN+GAKNLY+++V G RLNRLPAA GDM++ATVKKGK
Sbjct: 9 SGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGK 68
Query: 188 PELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKG 310
P+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KG
Sbjct: 69 PDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKG 109
>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 126
Score = 39.5 bits (88), Expect = 1e-04
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 9/64 (14%)
Frame = +2
Query: 143 AGSGDMIVATVKKGKPEL---------RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 295
A GD +V VKK + R + A+++R + P RR DG ++ F+DNA V+
Sbjct: 31 ASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVL 90
Query: 296 VNNK 307
VN +
Sbjct: 91 VNKE 94
>SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 886
Score = 31.9 bits (69), Expect = 0.023
Identities = 24/88 (27%), Positives = 39/88 (44%)
Frame = -1
Query: 294 MTPALSSKYMNTPSRLLNGFRCLITTAGITFFLSSGLPFLTVATIMSPEPAAGNLFRRPL 115
+ ALSS+Y S L +T +T LSS T +++ +P P + R P
Sbjct: 777 LAKALSSEYTFQKSVLAGLSAATRSTKDLTILLSSSARHYTESSLATPVPLMSPIARVPA 836
Query: 114 IPCTAITYRFFAPVLSAQLITAPTGRPS 31
P +A A +++ LI +P P+
Sbjct: 837 TPLSA-ALGSAAQSITSPLIMSPAAIPA 863
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 27.1 bits (57), Expect = 0.65
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = -1
Query: 255 SRLLNGFRCLITTAGITFFLSSGLPFLTVATIMSPEPAAGNLFRRPLIPCTAITYR 88
+ LLN F L+ +T + S + + ++ EP ++ C ++TYR
Sbjct: 446 TELLNSFSKLVRNDNLTLWFSEFIRWSDNPILVKNEPVDERVYLPETFECISLTYR 501
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 0.86
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 283 IILEIYEHPVPPSKWFPLPDHHCWHYLFP 197
++ EI+ HP + FPLP LFP
Sbjct: 438 LVSEIFRHPTHTDEDFPLPSPSLSSLLFP 466
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 26.2 bits (55), Expect = 1.1
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +2
Query: 176 KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 286
KKG P RK P+++ PF RD +FI E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375
>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 571
Score = 26.2 bits (55), Expect = 1.1
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 121 SSEQVTSCWFW*HDCGHS*ERQTRTQEKGNASSG 222
SS ++T CWFW R E G A+ G
Sbjct: 366 SSNEITHCWFWPKFSEFLKPRDVLITETGTANFG 399
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.4 bits (53), Expect = 2.0
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +2
Query: 161 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 292
IV KGK L + P++ I R G +Y ED GV
Sbjct: 309 IVVLSSKGKVSLESPMSPSLPIEGTFRSFRVHGATLYLEDTDGV 352
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 23.8 bits (49), Expect = 6.1
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -3
Query: 247 SKWFPLPDHHCWHYLF 200
S W LPD WH+++
Sbjct: 216 SAWRKLPDAEAWHHIW 231
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 23.8 bits (49), Expect = 6.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 99 ITYRFFAPVLSAQLITAPTGRPSEMR 22
+ Y F P+LS QL T P +P+ +R
Sbjct: 80 VAYSFSDPILSTQLRTPPP-QPTSIR 104
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 23.4 bits (48), Expect = 8.1
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -3
Query: 244 KWFPLPDHHC 215
KWFP HHC
Sbjct: 96 KWFPEVHHHC 105
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 23.4 bits (48), Expect = 8.1
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -3
Query: 253 PPSKWFPLPD 224
PP KW P+PD
Sbjct: 537 PPPKWKPMPD 546
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,452,417
Number of Sequences: 5004
Number of extensions: 30022
Number of successful extensions: 84
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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