Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H09
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2...    92   3e-20
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    32   0.029
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    25   3.3  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   4.4  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   4.4  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    24   7.7  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    24   7.7  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    24   7.7  

>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 91.9 bits (218), Expect = 3e-20
 Identities = 45/82 (54%), Positives = 53/82 (64%)
 Frame = +3

Query: 81  KGESEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINEND 260
           K  +EHINLKV+GQDN  V FKIKK T   KLM  YC R G SM  +RF  DG+ I  + 
Sbjct: 30  KPSTEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQ 89

Query: 261 TPTSLEMEEGDTIEVYQQQTGG 326
           TP  L+ME+GD IE   +Q GG
Sbjct: 90  TPAELDMEDGDQIEAVLEQLGG 111


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 32.3 bits (70), Expect = 0.029
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 165 LRKLMNAYCDRAGLSM-QVVRFRFDGQPINENDTPTSLEMEEGDTIEV 305
           ++ L+  YC    +S  + +R  F+G+ ++ ND   S E+E+ D + V
Sbjct: 356 VKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSV 403


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 81  KGESEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDR 197
           K +S HI +   G+ NA+V+ KI K   ++  +   CD+
Sbjct: 170 KSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDK 208


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +3

Query: 54  NYSKMSDEKKGESEHINLKVLGQDNAIVQFKIKKHTPLRKLMNA 185
           NYS   D +    E +   +L + N+  Q  ++ HTP+  + ++
Sbjct: 63  NYSSAVDPRTTSLEDVPRLILTRSNSQEQTPLRTHTPVEYMSDS 106


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -3

Query: 279 FRVMLVCHFRLLVAHQI*IARLALINQLYHNKH 181
           F+ +  C++ L + H I +A    +++ Y++ H
Sbjct: 50  FKCLSSCNYALSILHNICLASFLYLSKCYYHTH 82


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -2

Query: 154 FLILNWT--IALSCPSTFKLICSLSPFFSS 71
           ++++ WT  +A++C ST K I    P F+S
Sbjct: 134 WVVVAWTSFVAVNCQSTTKFIFGELPVFNS 163


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 241 CPSNLNRTTCIDKPALSQ*AFISFLKGVCFLILN 140
           CP NLN   CI +P  S    +SFL+    ++ N
Sbjct: 489 CPLNLNVCCCIAEPIQS--FILSFLRSTYKVLKN 520


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +1

Query: 196 ELVYQCKSCDLD 231
           E++Y+CK+C LD
Sbjct: 106 EVIYRCKNCGLD 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,712,131
Number of Sequences: 5004
Number of extensions: 32002
Number of successful extensions: 73
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)