Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_H09
(401 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782 94 3e-20
01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532 93 7e-20
07_03_0989 + 23161020-23161412 52 2e-07
07_03_0990 + 23173868-23174200 50 5e-07
01_06_1364 + 36684937-36685281 49 2e-06
01_05_0651 + 23930455-23930457,23930543-23930636,23930764-239308... 45 3e-05
07_03_0988 + 23160028-23160360 44 6e-05
01_04_0034 + 15318509-15319567 35 0.028
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 29 1.4
04_01_0478 - 6257038-6257198,6258225-6258433,6259648-6259692,625... 28 2.4
07_03_0991 + 23174743-23175726 27 4.2
01_01_0136 + 1237623-1237820,1238313-1239001,1239978-1240308,124... 27 4.2
02_04_0226 + 21073967-21074179,21074711-21074832,21074926-210753... 27 5.6
03_01_0476 - 3660327-3661261,3661401-3661668 27 7.3
08_02_0940 - 22822391-22822781,22822875-22823053,22823079-228234... 26 9.7
03_06_0744 + 35910512-35910569,35911145-35911325,35912332-359124... 26 9.7
01_06_0378 - 28869648-28869710,28869856-28870365 26 9.7
>01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782
Length = 101
Score = 94.3 bits (224), Expect = 3e-20
Identities = 47/90 (52%), Positives = 58/90 (64%), Gaps = 5/90 (5%)
Frame = +3
Query: 72 DEKK-----GESEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFD 236
DEKK G HINLKV GQD V F+IK+ T L+KLMNAYCDR + ++ + F FD
Sbjct: 8 DEKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDIKSIAFLFD 67
Query: 237 GQPINENDTPTSLEMEEGDTIEVYQQQTGG 326
G+ +N TP LEME+GD I+ QTGG
Sbjct: 68 GRRLNAEQTPDQLEMEDGDEIDAMLHQTGG 97
>01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532
Length = 100
Score = 93.1 bits (221), Expect = 7e-20
Identities = 43/82 (52%), Positives = 53/82 (64%)
Frame = +3
Query: 81 KGESEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINEND 260
+G HINLKV GQD V F+IK+ T L+KLMNAYCDR + M + F FDG+ +
Sbjct: 15 EGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQ 74
Query: 261 TPTSLEMEEGDTIEVYQQQTGG 326
TP LEME+GD I+ QTGG
Sbjct: 75 TPDELEMEDGDEIDAMLHQTGG 96
>07_03_0989 + 23161020-23161412
Length = 130
Score = 51.6 bits (118), Expect = 2e-07
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Frame = +3
Query: 93 EHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQ--VVRFRFDGQPINENDTP 266
E++ LKV G D V + + L+ LM+ Y DR+ +Q RF FDG+ + TP
Sbjct: 37 EYVTLKVQGTDGRAVYRTMLRTEELQGLMDFYYDRSHGRVQRGTGRFLFDGRRLRGWQTP 96
Query: 267 TSLEMEEGDTIEVYQQQTGG 326
L+ME+GD + +++ GG
Sbjct: 97 AELQMEDGDEVNFFEELIGG 116
>07_03_0990 + 23173868-23174200
Length = 110
Score = 50.4 bits (115), Expect = 5e-07
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +3
Query: 81 KGESEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQ--VVRFRFDGQPINE 254
K E++ LKV D V ++ L+ LM+ Y DRA +Q RF +DG+ ++
Sbjct: 25 KRAGEYVTLKVQDTDGRAVYRTMRWTEQLQGLMDFYYDRAHGRVQRGTGRFLYDGRRLSG 84
Query: 255 NDTPTSLEMEEGDTIEVYQQQTGG 326
TP L+ME+GD ++ +++ GG
Sbjct: 85 WQTPAELDMEDGDEVDFFEELIGG 108
>01_06_1364 + 36684937-36685281
Length = 114
Score = 48.8 bits (111), Expect = 2e-06
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 99 INLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRF-RFDGQPINENDTPTSL 275
I + V Q A V F IK LR++M+ YC + L + V+F DG+ + TP +
Sbjct: 32 ITITVTSQTFADVYFAIKPRVKLRRVMDLYCGKHSLDPKTVKFIDDDGRFVRSEQTPEEV 91
Query: 276 EMEEGDTIEVYQQQTGG 326
+++G TI + Q GG
Sbjct: 92 GLQDGSTISLAIDQQGG 108
>01_05_0651 +
23930455-23930457,23930543-23930636,23930764-23930849,
23930930-23931108,23932275-23932482,23932808-23932975
Length = 245
Score = 44.8 bits (101), Expect = 3e-05
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +3
Query: 138 QFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDTPTSLEMEEGDTIEV 305
QF++ K KL AY + LS+ + F FDG ++ TP L +E+ D +EV
Sbjct: 185 QFRLYKDEKFGKLFRAYAKKVNLSVADLTFAFDGDKVDAESTPEDLGLEDEDMVEV 240
>07_03_0988 + 23160028-23160360
Length = 110
Score = 43.6 bits (98), Expect = 6e-05
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +3
Query: 99 INLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRA-GLSMQVVRFRFDGQPINENDTPTSL 275
I LKV+ Q++ ++ I+ L+ +M+ Y +A ++ F FDG + + TP L
Sbjct: 21 ITLKVMDQEDRRIRHTIRMADKLQVVMDMYYAKAPDVTYGTGTFLFDGIRLKGDMTPMGL 80
Query: 276 EMEEGDTIEVYQQQTGG 326
EM +GDT++ + GG
Sbjct: 81 EMVDGDTVDFFPVMIGG 97
>01_04_0034 + 15318509-15319567
Length = 352
Score = 34.7 bits (76), Expect = 0.028
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +3
Query: 90 SEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSM--QVVRFRFDGQPINENDT 263
S + + +L A + +++ L+ LM+ R SM ++G+ + ++ T
Sbjct: 273 SRFVTIDLLTMVKAKRTYTLRRTDKLQGLMDLCLSREPASMYRHGCVLIYEGRRVQDSQT 332
Query: 264 PTSLEMEEGDTIEVYQQQTG 323
P L++E+GDTI +Q G
Sbjct: 333 PDDLKLEDGDTIHAIARQVG 352
Score = 26.6 bits (56), Expect = 7.3
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +3
Query: 117 GQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFR--FDGQPINENDTPTSLEMEEG 290
G+ +V +++ L++L++ Y Q + + G+ + +TP EME+G
Sbjct: 202 GRSGVVVTRPMRRTDELQRLIDYYFAMVPTDDQNGEWAVTYGGRQVGGEETPADYEMEDG 261
Query: 291 DTIEV 305
D + +
Sbjct: 262 DQLRL 266
>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +3
Query: 147 IKKHTPLRKLMN----AYCDRAGLSMQVVRFRFDGQPINENDTPTSLEMEEGDTIEVYQQ 314
IK+H L KL+N + C RA L + R+ G + + L MEE + E +
Sbjct: 1742 IKEHRTLAKLLNGTLGSICSRAQLCSKSQRYIIQGNWLQTSTATGRLSMEEPNLQENWLL 1801
Query: 315 QTGGFSLV 338
T +S +
Sbjct: 1802 VTADYSQI 1809
>04_01_0478 -
6257038-6257198,6258225-6258433,6259648-6259692,
6259903-6259946,6260017-6260087,6260395-6260506,
6260544-6260654,6262694-6262741,6262849-6263028
Length = 326
Score = 28.3 bits (60), Expect = 2.4
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = -3
Query: 342 FTLKKTRPSAADRLLLYHLLPFRVMLVCHFRLLVAHQI*IARLALINQLYHNKHSSVFSK 163
FT+K R A L + LL ML HF+ L+ + RL L +Y +FSK
Sbjct: 71 FTMKPERKYTAKHLHMKDLLTIVAMLAAHFQTLLEESL---RLLLHFYVYPPDRVRLFSK 127
>07_03_0991 + 23174743-23175726
Length = 327
Score = 27.5 bits (58), Expect = 4.2
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Frame = +3
Query: 90 SEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVR--FRFDGQPINENDT 263
S I L+V + + ++ L LM+ Y M F G+ + + T
Sbjct: 22 SSLITLRVKDSEGVRITRTMRTTDALDDLMDFYLGMVPADMDAAEGVFMHYGRRVTGDRT 81
Query: 264 PTSLEMEEGDTIEVYQQQT 320
P +ME+GD + + T
Sbjct: 82 PADYDMEDGDEVSFFPDGT 100
>01_01_0136 +
1237623-1237820,1238313-1239001,1239978-1240308,
1240614-1241351
Length = 651
Score = 27.5 bits (58), Expect = 4.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 222 RFRFDGQPINENDTPTSLEMEEGDTIEVYQQQTGGFSLV 338
R R +G+ E E+EEG+ + Q+TG F LV
Sbjct: 330 RARANGEVKQEQQQEEEEEVEEGEVSQEETQRTGAFPLV 368
>02_04_0226 +
21073967-21074179,21074711-21074832,21074926-21075370,
21075453-21075559,21075656-21076463,21076691-21077128,
21077349-21077537,21077616-21077843,21077943-21078140,
21078304-21078379,21078452-21078593,21078749-21079238
Length = 1151
Score = 27.1 bits (57), Expect = 5.6
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 135 VQFKIKKHTPLRK-LMNAYCDRAGLSMQVVRFRFDGQPINENDTPTSLEME 284
V +K K L + L+ A C MQ +F +GQP N ND +++ E
Sbjct: 515 VVWKAKDAKSLEEDLVRAACKLELSMMQTCKFTAEGQPENLNDNLKAIQKE 565
>03_01_0476 - 3660327-3661261,3661401-3661668
Length = 400
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 57 YSKMSDEKKGESEHINLKVLGQDNAIVQFKIKKH 158
Y K+ ++ K + E + +V G D+A K KKH
Sbjct: 350 YEKVKEKAKEKVEEVKERVTGADDAADHGKEKKH 383
>08_02_0940 -
22822391-22822781,22822875-22823053,22823079-22823428,
22823522-22823765
Length = 387
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 60 SKMSDEKKGESEHINLKVLGQDNAIVQFKIKKHTPLRKLM 179
S+ SD+ +G S L++ + +A ++ K+H+ L L+
Sbjct: 161 SRASDDDEGASARKKLRLSKEQSAFLEESFKEHSTLNPLL 200
>03_06_0744 +
35910512-35910569,35911145-35911325,35912332-35912419,
35912541-35912726,35913591-35913725,35913803-35913862,
35914609-35914698,35915384-35915515,35916039-35916183,
35916266-35916439,35916629-35916692,35916778-35916847,
35917328-35917445,35918258-35918280,35918398-35918499,
35919831-35920250,35920327-35920563
Length = 760
Score = 26.2 bits (55), Expect = 9.7
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 121 CPSTFKLICSLSP 83
CP+ F+ ICSLSP
Sbjct: 93 CPTVFQAICSLSP 105
>01_06_0378 - 28869648-28869710,28869856-28870365
Length = 190
Score = 26.2 bits (55), Expect = 9.7
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 306 RLLLYHLLPFRVMLVCHFRLLVA 238
RL+ + LL +RV L+C RL+V+
Sbjct: 160 RLMCFFLLGYRVRLLCLLRLVVS 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,402,128
Number of Sequences: 37544
Number of extensions: 183181
Number of successful extensions: 370
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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