Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_H09
(401 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X99600-1|CAA67914.1| 91|Caenorhabditis elegans ubiquitin-like ... 95 2e-20
U94830-1|AAB67608.1| 91|Caenorhabditis elegans ubiquitin-like ... 95 2e-20
AF043701-6|AAK18969.1| 91|Caenorhabditis elegans Sumo (ubiquit... 95 2e-20
U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein. 34 0.044
AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp (sp... 34 0.044
AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical ... 33 0.058
Z30317-1|CAA82967.1| 213|Caenorhabditis elegans Hypothetical pr... 28 2.2
U52002-9|AAB37727.2| 839|Caenorhabditis elegans Human dice1 (de... 26 8.8
U52002-8|AAU05577.1| 842|Caenorhabditis elegans Human dice1 (de... 26 8.8
>X99600-1|CAA67914.1| 91|Caenorhabditis elegans ubiquitin-like
protein protein.
Length = 91
Score = 94.7 bits (225), Expect = 2e-20
Identities = 41/80 (51%), Positives = 60/80 (75%)
Frame = +3
Query: 90 SEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDTPT 269
+E+I +KV+GQD+ V F++K T + KL +Y DR G+++ +RF FDG+ IN++DTP
Sbjct: 12 AEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRINDDDTPK 71
Query: 270 SLEMEEGDTIEVYQQQTGGF 329
+LEME+ D IEVYQ+Q GGF
Sbjct: 72 TLEMEDDDVIEVYQEQLGGF 91
>U94830-1|AAB67608.1| 91|Caenorhabditis elegans ubiquitin-like
protein protein.
Length = 91
Score = 94.7 bits (225), Expect = 2e-20
Identities = 41/80 (51%), Positives = 60/80 (75%)
Frame = +3
Query: 90 SEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDTPT 269
+E+I +KV+GQD+ V F++K T + KL +Y DR G+++ +RF FDG+ IN++DTP
Sbjct: 12 AEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRINDDDTPK 71
Query: 270 SLEMEEGDTIEVYQQQTGGF 329
+LEME+ D IEVYQ+Q GGF
Sbjct: 72 TLEMEDDDVIEVYQEQLGGF 91
>AF043701-6|AAK18969.1| 91|Caenorhabditis elegans Sumo
(ubiquitin-related) homologprotein 1 protein.
Length = 91
Score = 94.7 bits (225), Expect = 2e-20
Identities = 41/80 (51%), Positives = 60/80 (75%)
Frame = +3
Query: 90 SEHINLKVLGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDTPT 269
+E+I +KV+GQD+ V F++K T + KL +Y DR G+++ +RF FDG+ IN++DTP
Sbjct: 12 AEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRINDDDTPK 71
Query: 270 SLEMEEGDTIEVYQQQTGGF 329
+LEME+ D IEVYQ+Q GGF
Sbjct: 72 TLEMEDDDVIEVYQEQLGGF 91
>U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein.
Length = 655
Score = 33.9 bits (74), Expect = 0.044
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = +3
Query: 117 GQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDTPTSLEMEEGDT 296
G D +IVQF I+ P+ +L DR G+ + + DG + +N + + +
Sbjct: 583 GMDGSIVQFTIQVTAPMSELKQQIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADRTA 642
Query: 297 IEVYQQQTGG 326
I + ++ GG
Sbjct: 643 IYLQVKERGG 652
>AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 21 protein.
Length = 655
Score = 33.9 bits (74), Expect = 0.044
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = +3
Query: 117 GQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPINENDTPTSLEMEEGDT 296
G D +IVQF I+ P+ +L DR G+ + + DG + +N + + +
Sbjct: 583 GMDGSIVQFTIQVTAPMSELKQQIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADRTA 642
Query: 297 IEVYQQQTGG 326
I + ++ GG
Sbjct: 643 IYLQVKERGG 652
>AF040644-5|AAD34647.1| 1032|Caenorhabditis elegans Hypothetical
protein H04J21.1 protein.
Length = 1032
Score = 33.5 bits (73), Expect = 0.058
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Frame = +3
Query: 60 SKMSDEKKGESEHINLKV---LGQDNAIVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFR 230
SK S EKK + + Q ++ ++++ L +L ++ G+ + +R
Sbjct: 907 SKKSAEKKSTEKSSAMTAPTNSAQQLEVLHSHVEENEKLGRLDKRISEKIGVDAKFIRVT 966
Query: 231 FDGQPINENDTPTSLEMEEGDTIEVYQQQTGG 326
++G+PI+ DTP SL + ++ + + G
Sbjct: 967 YNGRPIDPMDTPYSLGLSHTANFHMFFKPSPG 998
>Z30317-1|CAA82967.1| 213|Caenorhabditis elegans Hypothetical
protein T16G12.4 protein.
Length = 213
Score = 28.3 bits (60), Expect = 2.2
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -2
Query: 157 CFLILNWTIALSCPSTFKLICSLSPFFSSDIF--E*LYYRNYAHK 29
C LIL W I S + + + P F +D F E Y NY H+
Sbjct: 96 CTLILTWIITCSQLILYVFLLIVIPIFLTDYFASEAQRYMNYPHE 140
>U52002-9|AAB37727.2| 839|Caenorhabditis elegans Human dice1
(deleted in cancer)homolog protein 1, isoform a protein.
Length = 839
Score = 26.2 bits (55), Expect = 8.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 43 FYNTIIRKCLTKKRVKVNIST 105
+YNT IR CL K VKV+ S+
Sbjct: 429 YYNTQIRVCLDKFDVKVDYSS 449
>U52002-8|AAU05577.1| 842|Caenorhabditis elegans Human dice1
(deleted in cancer)homolog protein 1, isoform b protein.
Length = 842
Score = 26.2 bits (55), Expect = 8.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 43 FYNTIIRKCLTKKRVKVNIST 105
+YNT IR CL K VKV+ S+
Sbjct: 432 YYNTQIRVCLDKFDVKVDYSS 452
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,597,827
Number of Sequences: 27780
Number of extensions: 184891
Number of successful extensions: 446
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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