Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H08
         (154 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0661 - 27032068-27032756,27032864-27033260                       27   2.1  
01_05_0087 + 18018117-18018290,18019314-18019400,18019451-180195...    25   6.3  

>04_04_0661 - 27032068-27032756,27032864-27033260
          Length = 361

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
 Frame = +1

Query: 7   GSFGVLYIYTLLSA------IRCNHENLHRLVRIELFIIYLIRN 120
           G F  +Y+ +L S+      + C+ E LHR  R EL ++  +R+
Sbjct: 76  GGFSTVYLASLSSSRLGAVKVHCSSERLHRAFRQELEVLLSLRH 119


>01_05_0087 +
           18018117-18018290,18019314-18019400,18019451-18019552,
           18019602-18019637,18019776-18019820,18020500-18020781,
           18020839-18020859
          Length = 248

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 52  RCNHENLHRLVRIELFIIYLIRN*LCQVY 138
           R +H  +  L+ + L   Y+I N LCQV+
Sbjct: 136 RASHRQIPNLLSLGLGGFYIIGNHLCQVF 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,537
Number of Sequences: 37544
Number of extensions: 31876
Number of successful extensions: 38
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 14,793,348
effective HSP length: 31
effective length of database: 13,629,484
effective search space used: 258960196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)