Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H07
         (237 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   1.3  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    25   1.8  
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce...    23   4.1  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    23   5.4  
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    23   5.4  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    22   9.4  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    22   9.4  

>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 172 CTRSP*QSARWLTATHNPCKIWLHH 98
           C +S  +S  WL   HN  +IW+ H
Sbjct: 407 CYKSFRESRTWLHFLHNFSRIWILH 431


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 216 DVPVYSQHALLSVLTAPGHHDSLHGG*LRPTIL-VKFGFTTDQKYCDTDKNQHF 58
           DVP  S++   S +    HH +LH   +  ++      F   +K+C+  K  HF
Sbjct: 659 DVPP-SKNVTTSEVKQAHHHGNLHMMDMMKSLTDATSEFAFGEKFCEKHKGDHF 711


>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 363

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 109 KFYKDCGSQLATVQTVMVTGCSQDAKEC 192
           KF+     Q  T+ ++   GC++D K C
Sbjct: 49  KFHDPKKVQQCTLLSIKTGGCTEDCKYC 76


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 121 DCGSQLATVQTVMVTGCSQDAKECV 195
           DC SQL      M TG S+ AK+ V
Sbjct: 719 DCKSQLNAYLMQMRTGLSEKAKDHV 743


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 82  AVLLVGGEAKFYKDCGSQLATVQTVMVTGCSQDAKECVLRINRNV 216
           A++++       + C     ++  VMVT C Q A++    +NR V
Sbjct: 405 AIVVLSTSGNTARLCSKYRPSIPIVMVTRCPQRARQS--HLNRGV 447


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = -2

Query: 167 PVTMTVCTVANCDPQSL*NLASPPTKST 84
           PVT T  T  NC   +     S P  ST
Sbjct: 462 PVTSTPLTTTNCTTSTSIPYTSTPVTST 489


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 236 VNSMFMLTFLFIRSTH 189
           VN +F+L  ++I+STH
Sbjct: 49  VNFIFLLMRIYIKSTH 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 899,087
Number of Sequences: 5004
Number of extensions: 14325
Number of successful extensions: 30
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 58
effective length of database: 2,072,246
effective search space used: 41444920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)