Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H07
         (237 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0105 - 13505786-13505800,13505940-13506043,13506421-135066...    26   4.9  
05_03_0486 + 14616354-14617200,14617288-14617329,14619433-14620508     26   4.9  
10_06_0019 - 9688395-9688867,9688905-9689070                           25   6.5  
09_06_0158 + 21278519-21278817,21279190-21279379,21280901-21281269     25   6.5  

>11_04_0105 -
           13505786-13505800,13505940-13506043,13506421-13506649,
           13506661-13506954,13507139-13507338,13507531-13507585
          Length = 298

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 22  HNTSARSPFLI*KMLIFISIAVLLVGGEAKFYKDCG 129
           H    +   L+ +  IF+SI+ LLV G+A F   CG
Sbjct: 255 HYEVPQGSLLLGQWRIFMSISDLLVFGQASFNLFCG 290


>05_03_0486 + 14616354-14617200,14617288-14617329,14619433-14620508
          Length = 654

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 34  ARSPFLI*KMLIFISIAVLLVGGEAKFYKDCGSQLATVQTVMVTGC 171
           +R   L+  + + +++A+LL GG A+    CGS           GC
Sbjct: 7   SRRALLLFFLEVAVAMALLLPGGHARVCPPCGSTEVPYPLSTADGC 52


>10_06_0019 - 9688395-9688867,9688905-9689070
          Length = 212

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 234 EFDVHADVPVYSQHALLSVLTAPGHHDSLHG 142
           EF +H DV V  + A  + ++     D LHG
Sbjct: 143 EFAIHCDVAVVEEAAAAATMSTELGPDDLHG 173


>09_06_0158 + 21278519-21278817,21279190-21279379,21280901-21281269
          Length = 285

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 204 YSQHALLSVLTAPGHH 157
           +  H LLS LTA GHH
Sbjct: 103 FEGHYLLSALTAAGHH 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,146,800
Number of Sequences: 37544
Number of extensions: 101296
Number of successful extensions: 187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 14,793,348
effective HSP length: 57
effective length of database: 12,653,340
effective search space used: 265720140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)