Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H07
         (237 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X67698-1|CAA47928.1|  151|Homo sapiens protein ( H.sapiens tissu...    29   2.6  
BC002532-1|AAH02532.1|  151|Homo sapiens Niemann-Pick disease, t...    29   2.6  

>X67698-1|CAA47928.1|  151|Homo sapiens protein ( H.sapiens tissue
           specific mRNA. ).
          Length = 151

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 115 YKDCGSQLATVQTVMVTGCSQDAKECVLRINRNVSMNIEFT 237
           +KDCGS    ++ V V+ C    + C L   ++ S+N+ FT
Sbjct: 24  FKDCGSVDGVIKEVNVSPC--PTQPCQLSKGQSYSVNVTFT 62


>BC002532-1|AAH02532.1|  151|Homo sapiens Niemann-Pick disease, type
           C2 protein.
          Length = 151

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 115 YKDCGSQLATVQTVMVTGCSQDAKECVLRINRNVSMNIEFT 237
           +KDCGS    ++ V V+ C    + C L   ++ S+N+ FT
Sbjct: 24  FKDCGSVDGVIKEVNVSPC--PTQPCQLSKGQSYSVNVTFT 62


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,808,270
Number of Sequences: 237096
Number of extensions: 600967
Number of successful extensions: 5083
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5083
length of database: 76,859,062
effective HSP length: 57
effective length of database: 63,344,590
effective search space used: 1330236390
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)