Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H07
         (237 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92973-6|CAI79258.1|  440|Caenorhabditis elegans Hypothetical pr...    30   0.19 
Z81564-13|CAB04579.1|  243|Caenorhabditis elegans Hypothetical p...    25   5.4  
Z81564-12|CAB04578.1|  263|Caenorhabditis elegans Hypothetical p...    25   5.4  
AL032643-9|CAA21664.1|  243|Caenorhabditis elegans Hypothetical ...    25   5.4  
AL032643-8|CAA21663.1|  263|Caenorhabditis elegans Hypothetical ...    25   5.4  
Z81115-4|CAB03294.2|  651|Caenorhabditis elegans Hypothetical pr...    25   9.5  
Z75549-1|CAA99917.1|  424|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>Z92973-6|CAI79258.1|  440|Caenorhabditis elegans Hypothetical
           protein Y6G8.5 protein.
          Length = 440

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = +1

Query: 19  YHNTSARSPFLI*KMLIFISIAVLLVGGE---AKFYKDCGSQLATVQTVMVTGCSQDAKE 189
           ++N  +    L   +L F SI +L+ G E    +F+  CG Q + +     TG   DA E
Sbjct: 277 FNNFPSSKMHLFLNILAFASIGLLVNGEEWCMTQFF--CGYQHSVITYPFFTGKVADADE 334

Query: 190 CVLR-INRNVSMNIEF 234
           C  R +N    M+ EF
Sbjct: 335 CKNRCLNNPACMSSEF 350


>Z81564-13|CAB04579.1|  243|Caenorhabditis elegans Hypothetical
           protein Y54E5A.8b protein.
          Length = 243

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 83  QYFWSVVKPNFTRIVGRS*PP 145
           +++W  V+P  +R++  S PP
Sbjct: 89  EFYWKAVEPGGSRVISASLPP 109


>Z81564-12|CAB04578.1|  263|Caenorhabditis elegans Hypothetical
           protein Y54E5A.8a protein.
          Length = 263

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 83  QYFWSVVKPNFTRIVGRS*PP 145
           +++W  V+P  +R++  S PP
Sbjct: 109 EFYWKAVEPGGSRVISASLPP 129


>AL032643-9|CAA21664.1|  243|Caenorhabditis elegans Hypothetical
           protein Y54E5A.8b protein.
          Length = 243

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 83  QYFWSVVKPNFTRIVGRS*PP 145
           +++W  V+P  +R++  S PP
Sbjct: 89  EFYWKAVEPGGSRVISASLPP 109


>AL032643-8|CAA21663.1|  263|Caenorhabditis elegans Hypothetical
           protein Y54E5A.8a protein.
          Length = 263

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 83  QYFWSVVKPNFTRIVGRS*PP 145
           +++W  V+P  +R++  S PP
Sbjct: 109 EFYWKAVEPGGSRVISASLPP 129


>Z81115-4|CAB03294.2|  651|Caenorhabditis elegans Hypothetical
           protein T05D4.4 protein.
          Length = 651

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 124 NPCKIWLHHRPKVLRY 77
           N C++W H  PK  RY
Sbjct: 244 NTCRLWYHGCPKYERY 259


>Z75549-1|CAA99917.1|  424|Caenorhabditis elegans Hypothetical
           protein T19C4.1 protein.
          Length = 424

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 156 DSLHGG*LRPTILVKFGFTTDQ 91
           DS+H G LRP  +  F + TD+
Sbjct: 76  DSVHSGTLRPPKMSPFVYATDE 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,197,335
Number of Sequences: 27780
Number of extensions: 87584
Number of successful extensions: 185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 12,740,198
effective HSP length: 58
effective length of database: 11,128,958
effective search space used: 222579160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)