Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H06
         (196 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    27   0.26 
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    27   0.45 
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   1.4  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    24   2.4  
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar...    24   3.2  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    23   7.4  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    22   9.7  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    22   9.7  

>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 27.5 bits (58), Expect = 0.26
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +2

Query: 74  FFIKRLLFFS*QRGSSI*KQENAGATYQII 163
           FF  RLL+F   + SSI K  N GAT Q +
Sbjct: 257 FFNDRLLYFQFCQRSSIQKMINQGATIQFL 286


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.6 bits (56), Expect = 0.45
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = -3

Query: 137 FLVFRSSCRVAMKKT 93
           FLVFRS CR+A+++T
Sbjct: 390 FLVFRSMCRLAVRQT 404


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 138 MPEQPIKLYYLPPSPTCRS 194
           +P QP+ L Y  P+PT +S
Sbjct: 676 LPVQPVPLAYSKPAPTTKS 694


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 121 DLKTRKCRSNLSNYITFRHHRHADL 195
           D K RKC   L  +ITF+    ++L
Sbjct: 314 DEKKRKCLQALKRFITFQERESSNL 338


>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 289

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 145 SNLSNYITFRHHRHA 189
           +N  +YI+FRHH +A
Sbjct: 223 ANTDDYISFRHHIYA 237


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 33  EETIQNSSGLFQFFSLLNAY-CFFHSNAAARSKNKK 137
           E T+QNS  LF+F S  + +  ++ ++ A R  N +
Sbjct: 446 EATLQNSVTLFRFISEKDVFEKYYKTHLAKRLLNNR 481


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -2

Query: 102 EKNNRRLIKKKIETNH*NSV*FLRYMSLNNHPSC 1
           E++N+  +         N   FL  +  NNHP C
Sbjct: 229 EEHNQPSVSNVTVQRRYNDFAFLYQLLSNNHPGC 262


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = +3

Query: 108 NAAARSKNKKMPEQPIKLYYLPPSP 182
           N    S +      P+   YLPP+P
Sbjct: 161 NPVQESNSSSSQPDPLSFPYLPPTP 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 792,540
Number of Sequences: 5004
Number of extensions: 11994
Number of successful extensions: 26
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)