Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H06
         (196 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0035 + 358669-359007,359458-359617,359723-360582                 28   0.91 
04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572...    28   1.2  
01_06_0705 + 31342236-31342415,31343086-31343391,31343555-313437...    27   2.1  
07_03_0956 - 22869166-22871145,22871800-22871959,22872311-228723...    25   8.5  
04_04_1514 + 34114626-34114637,34114766-34114841,34115022-34115347     25   8.5  

>06_01_0035 + 358669-359007,359458-359617,359723-360582
          Length = 452

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 117 ARSKNKKMPEQPIKLYYLPPSP 182
           +R  +  +  QP+ LYYLPP P
Sbjct: 285 SRYGDLSLSSQPVSLYYLPPGP 306


>04_04_0201 -
           23555336-23556008,23556097-23556258,23556353-23557206,
           23557452-23557613,23558197-23558649,23559729-23559788,
           23559983-23560058,23561546-23561593,23561948-23562022,
           23562067-23562494
          Length = 996

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 120 ELPRCYEKNNRR--LIKKKIETNH*NSV*FLRYMSLNNHP 7
           E PR Y K       +KKK+E +H   V  + Y   +NHP
Sbjct: 538 EYPRSYYKCTHASCAVKKKVERSHEGHVTEIIYKGTHNHP 577


>01_06_0705 + 31342236-31342415,31343086-31343391,31343555-31343796,
            31343927-31344122,31344419-31344602,31344984-31345147,
            31345454-31345981,31346530-31346630,31347619-31347634,
            31347834-31347941,31348028-31348078,31349059-31349100,
            31349442-31349541,31350039-31350256,31350367-31350807,
            31350916-31351043,31351131-31351992
          Length = 1288

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 111  AAARSKNKKMPEQPIKLYYLPPS 179
            AA R++N K+PE P +LY +  S
Sbjct: 963  AAIRNRNMKLPENPDELYEISKS 985


>07_03_0956 -
           22869166-22871145,22871800-22871959,22872311-22872375,
           22872464-22872529,22872634-22872691,22872834-22872925,
           22873093-22873332
          Length = 886

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 141 PEQPIKLYYLPPSPTCR 191
           P+ P+ +Y+ PP   CR
Sbjct: 827 PKMPVAMYFAPPISLCR 843


>04_04_1514 + 34114626-34114637,34114766-34114841,34115022-34115347
          Length = 137

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 126 KNKKMPEQPIKLYYLPPSP 182
           K+ K PEQP KL + PP P
Sbjct: 87  KDDKKPEQP-KLVFYPPPP 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,091,970
Number of Sequences: 37544
Number of extensions: 70582
Number of successful extensions: 174
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 14,793,348
effective HSP length: 44
effective length of database: 13,141,412
effective search space used: 262828240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)