Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_H06
(196 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067211-6|AAC16989.1| 308|Caenorhabditis elegans Serpentine re... 27 1.8
AF067211-5|AAW88420.1| 329|Caenorhabditis elegans Serpentine re... 27 1.8
Z46794-3|CAA86783.1| 429|Caenorhabditis elegans Hypothetical pr... 26 3.2
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle... 26 3.2
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so... 26 3.2
AC006662-3|AAF39895.1| 368|Caenorhabditis elegans Hypothetical ... 26 4.3
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 25 9.8
AL031632-4|CAA21007.1| 451|Caenorhabditis elegans Hypothetical ... 25 9.8
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 25 9.8
AF098999-3|AAC68726.2| 445|Caenorhabditis elegans Hypothetical ... 25 9.8
AF025471-5|AAB71064.2| 334|Caenorhabditis elegans Serpentine re... 25 9.8
>AF067211-6|AAC16989.1| 308|Caenorhabditis elegans Serpentine
receptor, class z protein85, isoform a protein.
Length = 308
Score = 27.1 bits (57), Expect = 1.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 32 RRNYTEF*WFVSIFFFIKRLL 94
RRN +F W++ FFF+ L+
Sbjct: 125 RRNLPDFIWYLYAFFFVNELI 145
>AF067211-5|AAW88420.1| 329|Caenorhabditis elegans Serpentine
receptor, class z protein85, isoform b protein.
Length = 329
Score = 27.1 bits (57), Expect = 1.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 32 RRNYTEF*WFVSIFFFIKRLL 94
RRN +F W++ FFF+ L+
Sbjct: 146 RRNLPDFIWYLYAFFFVNELI 166
>Z46794-3|CAA86783.1| 429|Caenorhabditis elegans Hypothetical
protein R06F6.4 protein.
Length = 429
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 60 LFQFFSLLNAYCFFHSNAAARSKNKKMPEQPIKLYYLPPSPTCRS 194
LFQ + L +C + A +++ E+P++ Y P S CR+
Sbjct: 374 LFQKYQLAQLFCAAGAKTQATKLLQEI-EEPLEKIYTPDSMICRN 417
>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucleotide
exchange factorfor RAS protein.
Length = 1413
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 36 ETIQNSSGLFQFFSLLNAYCFF 101
E + N +GL F+S LN+ C F
Sbjct: 980 EELHNFTGLVAFYSALNSSCIF 1001
>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
homolog protein 1 protein.
Length = 1493
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 36 ETIQNSSGLFQFFSLLNAYCFF 101
E + N +GL F+S LN+ C F
Sbjct: 980 EELHNFTGLVAFYSALNSSCIF 1001
>AC006662-3|AAF39895.1| 368|Caenorhabditis elegans Hypothetical
protein H23L24.4 protein.
Length = 368
Score = 25.8 bits (54), Expect = 4.3
Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 49 ILVVCFNFFLY*TPIVFFIATRQL-DLKT 132
++ + FN + + P+++F+ TRQ DL+T
Sbjct: 294 VINLLFNVYSFTNPLLYFVFTRQFRDLRT 322
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 149 LLRHFLVFRSSCRVAMKK 96
++RH L +RSSCR +K+
Sbjct: 2091 IIRHGLDYRSSCRQCLKQ 2108
>AL031632-4|CAA21007.1| 451|Caenorhabditis elegans Hypothetical
protein Y32B12B.5 protein.
Length = 451
Score = 24.6 bits (51), Expect = 9.8
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 49 ILVVCFNFFLY*T-PIVFFIATRQLDLKTRKCRSNLSNYIT 168
I+VVCF L+ + I FF+ + Q + TR N +T
Sbjct: 332 IIVVCFTTILFCSLNIYFFMTSIQCHMSTRTLELNRQLLVT 372
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 149 LLRHFLVFRSSCRVAMKK 96
++RH L +RSSCR +K+
Sbjct: 2091 IIRHGLDYRSSCRQCLKQ 2108
>AF098999-3|AAC68726.2| 445|Caenorhabditis elegans Hypothetical
protein W04C9.3 protein.
Length = 445
Score = 24.6 bits (51), Expect = 9.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 60 LFQFFSLLNAYCFFHSNAAARSKNKKMPEQPIKLYYL 170
LF F + CFF S+ ++++ +MP + YYL
Sbjct: 406 LFVFVVSIGMVCFFGSHMLKKTQDCEMPIPVPEGYYL 442
>AF025471-5|AAB71064.2| 334|Caenorhabditis elegans Serpentine
receptor, class h protein195 protein.
Length = 334
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 25 HIAKKLYRILVVCFNFFLY*TPIVFFI--ATRQLDLKT 132
H+ ++ I ++CF FL+ +VF I + +QL KT
Sbjct: 195 HMIAAVFHIALICFEVFLF---VVFLIRNSAKQLKEKT 229
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,483,978
Number of Sequences: 27780
Number of extensions: 68858
Number of successful extensions: 166
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 12,740,198
effective HSP length: 44
effective length of database: 11,517,878
effective search space used: 230357560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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