Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_H04
(274 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 1.5
SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr 1... 25 2.5
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 24 3.4
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 24 4.4
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 23 5.9
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 23 5.9
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 23 7.8
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 23 7.8
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|... 23 7.8
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo... 23 7.8
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.4 bits (53), Expect = 1.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 114 FFSLVRKSFGFL*GVHSRRFTMEDSTIYQ 200
F ++R FG VH++ FT+E+ I Q
Sbjct: 1364 FPKVIRVGFGDSISVHAKEFTLEEQMIKQ 1392
>SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr
1|||Manual
Length = 115
Score = 24.6 bits (51), Expect = 2.5
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = -3
Query: 164 TMYTLKKSKRFTN*REKVTLNICFYNTYKR 75
+++T F+ R+ + N CFY+T+ +
Sbjct: 14 SLFTFSLKPLFSQYRKHIYFNDCFYSTFNK 43
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 24.2 bits (50), Expect = 3.4
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -2
Query: 165 YYVHLKEIQKIYELTRKSYTKYMFL*YIQEETL*LVQNLCESNLNF 28
YY+ L+E E TRK Y + L + + NL E N F
Sbjct: 485 YYLDLEESVGTIETTRKLYDRVFELKIATPQVVVNYANLLEENAYF 530
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 23.8 bits (49), Expect = 4.4
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1
Query: 229 SNLDISSCICWYIVESSMVKRLLCTP*RNPKDLRTNEKKLH 107
+N DISS + +V + + R ++ NEK LH
Sbjct: 46 ANADISSPVVQTVVHKEATENPTASSYRKDDSVKQNEKLLH 86
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 23.4 bits (48), Expect = 5.9
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +2
Query: 146 SLRCT**AFY-HGGLHYIPT 202
+L+C FY HGG HY+ T
Sbjct: 134 NLKCDKVIFYVHGGAHYLST 153
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 23.4 bits (48), Expect = 5.9
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 112 TFSR*FVNLLDFFK-VYIVGVLPWRTPLYT-NICKMKCPDLKQKYLVVRS 255
+F+R F+N + K + VG LY+ +K PDLKQ Y + S
Sbjct: 580 SFTRQFLNAIYLAKPISEVGAEQLLLDLYSFKNALLKLPDLKQDYSITDS 629
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 23.0 bits (47), Expect = 7.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 172 LPWRTPLYTNICKMKCPDLKQKYLVVR 252
L W+ P TN+ +K P L+ VR
Sbjct: 163 LEWKNPHLTNVGTLKAPILRLVIKCVR 189
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 23.0 bits (47), Expect = 7.8
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +3
Query: 159 HSRRFTMEDSTIYQHMQDEMSRFEAE 236
+ +FT ED+ + + ++ SR AE
Sbjct: 120 YQNKFTSEDNASFGELMEDESRLRAE 145
>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 402
Score = 23.0 bits (47), Expect = 7.8
Identities = 7/23 (30%), Positives = 13/23 (56%)
Frame = +1
Query: 139 LDFFKVYIVGVLPWRTPLYTNIC 207
+D+ K ++ W+TPL+ C
Sbjct: 331 IDYRKDETEAIIRWKTPLHAETC 353
>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 23.0 bits (47), Expect = 7.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 193 IVESSMVKRLLCTP*RNPKDLRTNEKK 113
+ ES + RLLC RNP+ + K
Sbjct: 320 VAESIAITRLLCDVNRNPEAFPVSSSK 346
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,255,228
Number of Sequences: 5004
Number of extensions: 24998
Number of successful extensions: 68
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -