Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_H04
(274 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0347 - 2730242-2730425,2730541-2730692,2730782-2730940,273... 28 0.89
01_07_0074 - 40894916-40895754,40896322-40896691,40897239-408972... 27 1.5
10_08_0989 + 22069244-22071679 27 2.0
11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195 27 2.7
08_01_1067 + 10893720-10894585,10895125-10895348,10895518-108957... 27 2.7
02_02_0374 + 9538478-9540385 27 2.7
12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,146... 26 3.6
11_01_0194 + 1539847-1541533,1541650-1541730,1541773-1542335 26 3.6
08_01_0143 - 1125211-1126414,1129217-1129368 26 4.7
07_03_1177 - 24574682-24574852,24575047-24575618,24575711-245760... 25 6.3
06_03_1041 - 27086661-27086981,27087089-27087295,27087398-270876... 25 6.3
>03_01_0347 -
2730242-2730425,2730541-2730692,2730782-2730940,
2734144-2734618,2734713-2734775,2734870-2735078
Length = 413
Score = 28.3 bits (60), Expect = 0.89
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -1
Query: 238 ISASNLDISSCIC---WYIVESSMVKR 167
+ S L ++SCIC WYI+++S +KR
Sbjct: 229 LKGSFLAVASCICWSIWYILQASSLKR 255
>01_07_0074 -
40894916-40895754,40896322-40896691,40897239-40897291,
40897456-40897593,40897646-40897716,40898655-40898900,
40899205-40899386,40899494-40899697
Length = 700
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 256 AISLPDISASN-LDISSCICWYIVESSMVKRLLCT 155
++ LPD A++ L I S I W + S+VK +CT
Sbjct: 100 SVVLPDADATDFLGILSLIIWTLTLMSLVKWYICT 134
>10_08_0989 + 22069244-22071679
Length = 811
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 152 LKKSKRFTN*REKVTLNICFYNTYKRKHYDWYRICVKVILI 30
+++ +RF L+I T K YDW + +K++LI
Sbjct: 704 MRRDERFKGLETLAELSIKLVETNKHVLYDWVYLLLKLVLI 744
>11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195
Length = 767
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 258 LRSHYQIFLLQIWTFHLAYVGI*WS 184
L H + LL + FHL Y+G+ WS
Sbjct: 426 LPHHMKSCLLHLGLFHLRYLGLRWS 450
>08_01_1067 +
10893720-10894585,10895125-10895348,10895518-10895708,
10896082-10896390
Length = 529
Score = 26.6 bits (56), Expect = 2.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -2
Query: 189 WSPPW*NAYYVHLKEIQ 139
W PPW N+Y H +E +
Sbjct: 389 WHPPWYNSYSSHYQEFE 405
>02_02_0374 + 9538478-9540385
Length = 635
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 130 VNLLDFFKVYIVGVLPWRTPLYTNICKMKC 219
V +DFF ++ + W TP+ T C ++C
Sbjct: 212 VQFMDFFSSSMMANIKWNTPMPTK-CSVQC 240
>12_01_0199 -
1467137-1467172,1467302-1467391,1468304-1468396,
1468488-1469515,1470005-1470552,1470656-1470695,
1473774-1475196
Length = 1085
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 177 W*NAYYVHLKEIQKIYELTRKSY 109
W N YY + + +KIY TR+++
Sbjct: 215 WPNPYYSYWQNSRKIYNFTREAF 237
>11_01_0194 + 1539847-1541533,1541650-1541730,1541773-1542335
Length = 776
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 177 W*NAYYVHLKEIQKIYELTRKSY 109
W N YY + + +KIY TR+++
Sbjct: 223 WPNPYYSYWQNSRKIYNFTREAF 245
>08_01_0143 - 1125211-1126414,1129217-1129368
Length = 451
Score = 25.8 bits (54), Expect = 4.7
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Frame = -3
Query: 209 LHMLVYSGVLHGKTPTMYTLKKSKRFTN*REKVTLNICF---YNTYKRKHYDWYRICVKV 39
+H L G+LHGK TL K ++C Y+RK + W I +
Sbjct: 359 VHELRLKGILHGKFSDKCTLSFLKNLAGLISLPPQHVCLLAHLEAYQRKRWMW--IPIHK 416
Query: 38 ILIFYYRI 15
L YRI
Sbjct: 417 FLYNNYRI 424
>07_03_1177 -
24574682-24574852,24575047-24575618,24575711-24576068,
24576108-24576152
Length = 381
Score = 25.4 bits (53), Expect = 6.3
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 139 LDFFKVYIVGVLPWR 183
LD+ + Y+VGV PW+
Sbjct: 283 LDYMREYVVGVGPWK 297
>06_03_1041 -
27086661-27086981,27087089-27087295,27087398-27087675,
27088360-27088471
Length = 305
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 98 CFYNTYKRKHYDWYRICVK 42
CF K + DW+R+CVK
Sbjct: 107 CFGFAAKMPNIDWWRMCVK 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,367,369
Number of Sequences: 37544
Number of extensions: 129913
Number of successful extensions: 280
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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