Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H04
         (274 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   2.0  
AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    23   2.7  
AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           21   8.3  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    21   8.3  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -2

Query: 156 HLKEIQKIYELTRKSYTKYMFL*YIQEETL 67
           + KE +++ E+TRK + +   +  +Q+E L
Sbjct: 732 YAKEDERLQEMTRKLHQRQQHMKKLQQELL 761


>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
           protein.
          Length = 1253

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -2

Query: 189 WSPPW*NAYYVHLKEIQKIYELTRKSYTKYMF 94
           W+ P       HLK+  KI    R S   YM+
Sbjct: 333 WTLPGRTKMIAHLKDKNKIRHKKRWSQVMYMY 364


>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 223 LDISSCICWYIVES 182
           L  +SC  W IVES
Sbjct: 794 LPFASCFFWQIVES 807


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 23  NKKLRLLSHKFCTNHNVSSC 82
           +KKL +L H    + N +SC
Sbjct: 127 SKKLSVLMHNSAKHPNTNSC 146


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 304,807
Number of Sequences: 2352
Number of extensions: 5800
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 54
effective length of database: 436,971
effective search space used: 15730956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)