Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H04
         (274 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93375-2|CAB07564.2|  359|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha...    26   3.2  
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha...    26   3.2  
Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U97012-1|AAK39141.2|  109|Caenorhabditis elegans Hypothetical pr...    25   5.5  
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro...    25   5.5  
Z81124-8|CAD56599.1|  426|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z96047-8|CAC42278.1|  507|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z96047-7|CAB09413.1|  561|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U40797-8|AAL08029.1|  332|Caenorhabditis elegans Serpentine rece...    25   9.7  
AL031630-8|CAA20989.1|  282|Caenorhabditis elegans Hypothetical ...    25   9.7  
AF067215-1|AAC17011.1|  495|Caenorhabditis elegans Hypothetical ...    25   9.7  

>Z93375-2|CAB07564.2|  359|Caenorhabditis elegans Hypothetical
           protein C38C6.4 protein.
          Length = 359

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 159 VHLKEIQKIYELTRKSYTKYMFL*YIQ 79
           +++K   K Y +   SY  Y+F+ YIQ
Sbjct: 14  MYIKYFNKTYSIIEGSYNYYLFVFYIQ 40


>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase
           2 protein.
          Length = 1668

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 180 PW*NAYYVHLKEIQKIYELTRKSYTKYMFL*YI 82
           P  N  ++HLK+ QKI    RK +++ M+L Y+
Sbjct: 808 PGKNKLFIHLKDNQKIRH--RKRWSQVMYLYYL 838


>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
           protein 2 protein.
          Length = 1668

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 180 PW*NAYYVHLKEIQKIYELTRKSYTKYMFL*YI 82
           P  N  ++HLK+ QKI    RK +++ M+L Y+
Sbjct: 808 PGKNKLFIHLKDNQKIRH--RKRWSQVMYLYYL 838


>Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical
           protein F47B8.5 protein.
          Length = 579

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 60  PIIMFPLVCIIKTYI*CNFFSLVRKSFGFL*GVHSR-RFTMEDSTIYQ 200
           P I+F  +C+   +   NF +     F F    H++ +F +E  T+Y+
Sbjct: 306 PAIIFEAICLFSLFSFFNFITFSTSHFHF----HNKIKFLLEGETVYK 349


>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical
           protein C25D7.3 protein.
          Length = 2150

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -2

Query: 216 FHLAYVGI*WSPPW*NAYY-VHLKEIQKIYELTRKSYTK 103
           FH  Y  +    P  N +Y VH  + +K+YE   K   K
Sbjct: 549 FHRCYTSVITEEPLPNPFYWVHRGQWEKVYECNWKQRVK 587


>U97012-1|AAK39141.2|  109|Caenorhabditis elegans Hypothetical
           protein C04E6.8 protein.
          Length = 109

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 227 KSGHFILHMLVYSGVLHGKTPTM 159
           K G F++ ++ +  ++ GKTPTM
Sbjct: 62  KKGRFMVFLISFHRLVGGKTPTM 84


>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger
           protein protein.
          Length = 2150

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -2

Query: 216 FHLAYVGI*WSPPW*NAYY-VHLKEIQKIYELTRKSYTK 103
           FH  Y  +    P  N +Y VH  + +K+YE   K   K
Sbjct: 549 FHRCYTSVITEEPLPNPFYWVHRGQWEKVYECNWKQRVK 587


>Z81124-8|CAD56599.1|  426|Caenorhabditis elegans Hypothetical
           protein T21B4.14 protein.
          Length = 426

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 269 QSSRCDLTTRYFCFKSGHFILHMLVYSGVLHGKTPTMYTLKKSKR 135
           +SS     TR    +S  FIL + V+  ++    P M TL +SKR
Sbjct: 321 KSSHVSAQTRRLQIRS-FFILIIQVFIPIMFIMIPVMITLNRSKR 364


>Z96047-8|CAC42278.1|  507|Caenorhabditis elegans Hypothetical
           protein DY3.4b protein.
          Length = 507

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 169 VLPWRTPLYTNICKMKCPDLKQKYLVVRS 255
           VL WR   Y NI   +  D KQ+Y+V ++
Sbjct: 167 VLLWRDG-YLNILTKEIKDFKQRYIVQKA 194


>Z96047-7|CAB09413.1|  561|Caenorhabditis elegans Hypothetical
           protein DY3.4a protein.
          Length = 561

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 169 VLPWRTPLYTNICKMKCPDLKQKYLVVRS 255
           VL WR   Y NI   +  D KQ+Y+V ++
Sbjct: 221 VLLWRDG-YLNILTKEIKDFKQRYIVQKA 248


>U40797-8|AAL08029.1|  332|Caenorhabditis elegans Serpentine
           receptor, class u protein7 protein.
          Length = 332

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 97  HIFSVTFSR*FVNLLDFFKVYIVGVLPWRTPLYTNIC 207
           HIF V  S   VN+L FF  Y+    P  T + T+ C
Sbjct: 63  HIFIVVSSAHTVNILSFFFDYMSNRFP-ATGMMTSWC 98


>AL031630-8|CAA20989.1|  282|Caenorhabditis elegans Hypothetical
           protein Y38H6C.9 protein.
          Length = 282

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 151 KVYIVGVLPWRTPLYTNICKMKC 219
           K+ +VG+  WR  LY +IC+  C
Sbjct: 253 KLLVVGM--WRRVLYGSICRRDC 273


>AF067215-1|AAC17011.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK380.2 protein.
          Length = 495

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 23  NKKLRLLSHKFCTNHNVS 76
           ++K+  L H FC NH  S
Sbjct: 371 DRKIEKLKHSFCINHQFS 388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,829,189
Number of Sequences: 27780
Number of extensions: 134601
Number of successful extensions: 317
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 227290938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)