Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H03
         (161 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   1.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   1.0  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    18   9.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    18   9.8  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 154 NRSLLHNITLNSKTCFKQRRSAVFI 80
           NRS +   T+   TC + R +A++I
Sbjct: 335 NRSPVRPATVQYDTCCQGRATAIYI 359


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 48  MYTQFHQQHAHANP 7
           M+ Q H QH H  P
Sbjct: 168 MHHQMHTQHPHMQP 181


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 4/7 (57%), Positives = 7/7 (100%)
 Frame = -3

Query: 153 IGHCCII 133
           +G+CC+I
Sbjct: 73  VGNCCVI 79


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 4/7 (57%), Positives = 7/7 (100%)
 Frame = -3

Query: 153 IGHCCII 133
           +G+CC+I
Sbjct: 73  VGNCCVI 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,314
Number of Sequences: 438
Number of extensions: 445
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 33
effective length of database: 131,889
effective search space used:  2637780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)