Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_H02
(377 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 39 2e-04
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 31 0.079
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 29 0.18
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 29 0.18
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 29 0.32
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 28 0.56
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 26 1.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 3.0
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 25 3.9
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 3.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 5.2
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 5.2
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.2
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 25 5.2
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 6.9
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 24 6.9
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 24 9.1
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 24 9.1
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 24 9.1
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 24 9.1
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 24 9.1
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 39.1 bits (87), Expect = 2e-04
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +2
Query: 17 EMNGRIVGTKPLYVALAQRKEDRKAHL 97
EMN R++ KPLYVALAQRKE R++ L
Sbjct: 423 EMNQRMLAGKPLYVALAQRKEVRRSQL 449
Score = 24.2 bits (50), Expect = 6.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 17 EMNGRIVGTKPLYVALAQRKEDRKAHL 97
E+N + K LYV AQ+K +R+ L
Sbjct: 320 ELNDKEYKGKKLYVGRAQKKHEREEEL 346
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 30.7 bits (66), Expect = 0.079
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 189 PPYLLFNAMMVRAQMPQIRPTPRWTAQ-PPVRPSTQTPASAYANMQPP 329
P +L+ +A + R P+I+ P + Q PP +P + PA+A ++ PP
Sbjct: 328 PAHLVQSAPVQRKTTPKIQRLPPSSIQIPPPKPMQKFPANAASSESPP 375
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 29.5 bits (63), Expect = 0.18
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 5 RHEAEMNGRIVGTKPLYVALAQRKEDR 85
R + +NG +VG K ++V A+RK DR
Sbjct: 440 RAKDTLNGMMVGKKRIFVCFAERKSDR 466
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 29.5 bits (63), Expect = 0.18
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 20 MNGRIVGTKPLYVALAQRKEDRKAHLT 100
+NG + G K L+V A+++EDRK L+
Sbjct: 482 LNGVLFGKKRLFVNYAEKREDRKKRLS 508
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 28.7 bits (61), Expect = 0.32
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 306 AYANMQPPYRPPNKSSNTGCI 368
+YAN P PPN+ TGC+
Sbjct: 195 SYANKNPGLPPPNRREYTGCV 215
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 27.9 bits (59), Expect = 0.56
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 203 QEVWWEQSILLHYLVGISDPFVAYAYLPCVACTVKSNGLC 84
+E+W+E L H LVG C CT+ S GLC
Sbjct: 192 KELWFE---LNHTLVGFGQTICLPRGRRCDMCTLSSKGLC 228
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 26.2 bits (55), Expect = 1.7
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = -1
Query: 335 TVGWLHICVSRCRCLSAWSYRWLGSPSGCRSYLRHLCSDHHSVKQEVWWEQSILLHYLVG 156
T+ W++ C+ + Y L P L C+ ++K+ S+L Y+V
Sbjct: 723 TMDWINSCLKTHEIVDEEPYL-LNDPE---KELELGCTLESALKRARAQGPSLLEDYVVY 778
Query: 155 ISDPFVAYAYLPCVACTVKSNG 90
++ VA +P V VKSNG
Sbjct: 779 LTSKTVAPENVPAVISIVKSNG 800
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 3.0
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = +3
Query: 246 PTPRWTAQPPV----RPSTQTPASAYANMQPPYRPPNKSS 353
PTP+ +PP RPS P+ A A P PP SS
Sbjct: 131 PTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSS 170
>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.0 bits (52), Expect = 3.9
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 270 PPVRPSTQTPASAYANMQPPYRPPNKSSNT 359
PP+ P AS + QPPY P S T
Sbjct: 149 PPIPPPHLPNASGSSVYQPPYTPFRSVSTT 178
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.0 bits (52), Expect = 3.9
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = +3
Query: 207 NAMMVRAQMPQIRPTPRWTAQPPVRPSTQTPASAYANMQPPYRPP 341
NA V A + P P + P+T P S Y PP PP
Sbjct: 154 NAPTVSAPNSMVSPPPSFQPPSAAAPATSLP-SDYNPPPPPPPPP 197
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 24.6 bits (51), Expect = 5.2
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +3
Query: 204 FNAMMVRAQMPQIRPTPRWTAQPPVRPSTQT-PASAYANMQPPYRPP 341
FN + Q P + + +PPVRP+ T P + + PP
Sbjct: 1333 FNTAPIPQQAPLENQFSKMSLEPPVRPAVPTSPKPQIPDSSNVHAPP 1379
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 24.6 bits (51), Expect = 5.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 252 PRWTAQPPVRPSTQTPASAYANMQPPYRPPNKSSNT 359
P+W PVR T P + + PP PP SN+
Sbjct: 36 PQWEC--PVRGLTIPPPPSVDHSAPPSGPPPSYSNS 69
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 24.6 bits (51), Expect = 5.2
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +3
Query: 270 PPVRPSTQTPAS-AYANMQPPYRPPNKSSN 356
PP RP++Q P S N Y P SSN
Sbjct: 73 PPARPTSQRPNSWQPGNASTMYASPPPSSN 102
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 24.6 bits (51), Expect = 5.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 283 QALKHLHRLTQICNHPTVL 339
Q LK + L +ICNHP +L
Sbjct: 557 QPLKAIGLLKKICNHPDLL 575
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 24.2 bits (50), Expect = 6.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 178 ILCSHHTSCLTL*WSEHKCRKYDLHPDGLPNHL 276
++ +H CL +S H C + HPD LP L
Sbjct: 46 LINTHSNLCLFSNFS-HSCFLFCTHPDTLPTSL 77
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 24.2 bits (50), Expect = 6.9
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Frame = +2
Query: 182 FVPTIPPV*RYDGPSTNAANTTYTPMDCPTTCKT-------KHSNTCIGLRKYATTLPSS 340
F+ T G S + + T ++C ++CKT K+S++ + R T S
Sbjct: 187 FIATTNKTYSLSGKSLSCLDNTGVSLNCSSSCKTTPLQSREKNSSSFVCTRSSGLTFYDS 246
Query: 341 KQE 349
K+E
Sbjct: 247 KRE 249
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 23.8 bits (49), Expect = 9.1
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 234 PQIRPT-PRWTAQPPVRPSTQTPASAYANMQPPYRPPNKSS 353
PQ+ P P ++ P+ PS PA + PP P ++S
Sbjct: 429 PQVSPKRPTYSRSSPL-PSASVPALGDGSPDPPAAPSIQNS 468
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 23.8 bits (49), Expect = 9.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 267 QPPVRPSTQTPASAYANMQPPYRPPNKSS 353
+P V P+ TPA A P PP +SS
Sbjct: 724 KPQVTPAPPTPAPTPAVKHHPPPPPVRSS 752
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 23.8 bits (49), Expect = 9.1
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 221 PSTNAANTTYTPMDCPTTCKTKHSNTCIGLRKYATTLPSSKQEL 352
P T+ N T T + PTT S+T I +T LP+S +L
Sbjct: 137 PITDTINGT-TELIIPTTSYNNQSHTLIYSTYTSTYLPNSTIDL 179
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 23.8 bits (49), Expect = 9.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 104 VKSNGLCGLPCVELKQHKEVLFQ 36
+KSNG GLP V +K L Q
Sbjct: 789 IKSNGFKGLPIVVIKSITRQLIQ 811
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 23.8 bits (49), Expect = 9.1
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = +3
Query: 207 NAMMVRAQMPQIRPTPRWTAQPPVRPSTQTPASAYANMQPPYRPPNKS 350
N + ++ +P I P PP + A A++ P PP+ S
Sbjct: 406 NPLGMKFHLPPILPVGESVCLPPRTSAKPRIAEGIASLLNPEEPPSNS 453
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,705,317
Number of Sequences: 5004
Number of extensions: 36717
Number of successful extensions: 145
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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