Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_H02
         (377 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.17 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   4.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   6.4  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   6.4  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   6.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   6.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   6.4  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   6.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           20   8.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   8.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   8.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   8.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.17
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 234 PQIRPTPRWTAQPPVRPSTQTPASAYANMQPPYRPPNKS 350
           P  +P+P  + Q P R S   P+       PP  PP+++
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQN 59


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 177 PPALLGWNI 151
           PP LLGWN+
Sbjct: 17  PPRLLGWNV 25


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 249 TPRWTAQPPVRPSTQTPASA 308
           TP   A PP  PS+  P SA
Sbjct: 337 TPPKPAPPPPPPSSSGPDSA 356


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 296 TCIGLRKYATTLPSSKQELQHRLHYV 373
           +CI    YA   P  +QELQ R  ++
Sbjct: 329 SCIDPWIYAINHPRYRQELQKRCKWM 354


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 271 GWAVHRGVGRICGIC 227
           GW V R  G++ G C
Sbjct: 140 GWTVERKEGKVEGKC 154


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 271 GWAVHRGVGRICGIC 227
           GW V R  G++ G C
Sbjct: 156 GWTVERKEGKVEGKC 170


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 271 GWAVHRGVGRICGIC 227
           GW V R  G++ G C
Sbjct: 213 GWTVERKEGKVEGKC 227


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 296 TCIGLRKYATTLPSSKQELQHRLHYV 373
           +CI    YA   P  +QELQ R  ++
Sbjct: 329 SCIDPWIYAINHPRYRQELQKRCKWM 354


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 135 IRILAMRCMYCEVK 94
           +RI   RC YC +K
Sbjct: 64  LRINRNRCQYCRLK 77


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 135 IRILAMRCMYCEVK 94
           +RI   RC YC +K
Sbjct: 113 LRINRNRCQYCRLK 126


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 5/13 (38%), Positives = 9/13 (69%)
 Frame = +3

Query: 222 RAQMPQIRPTPRW 260
           + + P++RP P W
Sbjct: 222 KTKSPKLRPYPNW 234


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 289 VLGLTGGWAVHRGVGRICG 233
           V GL G  + H GVGR  G
Sbjct: 138 VQGLRGLKSCHTGVGRNVG 156


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 289 VLGLTGGWAVHRGVGRICG 233
           V GL G  + H GVGR  G
Sbjct: 138 VQGLRGLKSCHTGVGRNVG 156


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 289 VLGLTGGWAVHRGVGRICG 233
           V GL G  + H GVGR  G
Sbjct: 138 VQGLRGLKSCHTGVGRNVG 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,474
Number of Sequences: 438
Number of extensions: 3197
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)