Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_H01
(458 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 199 2e-52
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 84 1e-17
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 80 2e-16
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 54 1e-08
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 0.60
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 27 1.4
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 5.6
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 7.3
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 24 9.7
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 24 9.7
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 199 bits (485), Expect = 2e-52
Identities = 87/113 (76%), Positives = 105/113 (92%)
Frame = +2
Query: 11 AAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTA 190
AA+FRG++SMKEVDEQ+ ++Q KNS+YFVEWIP+NV AVC +PP+ LKM+ATFIGNST+
Sbjct: 314 AALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTS 373
Query: 191 IQELFKCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYR 349
IQE+F+ + +QF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY+
Sbjct: 374 IQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 426
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 83.8 bits (198), Expect = 1e-17
Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 8/117 (6%)
Frame = +2
Query: 17 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLK--------MAATF 172
++RG + ++V + I+ K + FV+W P K +CD PP+ ++ A
Sbjct: 318 LYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCM 377
Query: 173 IGNSTAIQELFKCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 343
+ N+T+I E + + +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 378 LSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 79.8 bits (188), Expect = 2e-16
Identities = 35/117 (29%), Positives = 67/117 (57%), Gaps = 8/117 (6%)
Frame = +2
Query: 17 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGL--------KMAATF 172
++RG + ++V + +I+++ + FV+W P K +C PP+ + A
Sbjct: 322 LYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCM 381
Query: 173 IGNSTAIQELFKCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 343
+ N+T+I E + + +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 382 LSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 53.6 bits (123), Expect = 1e-08
Identities = 30/114 (26%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Frame = +2
Query: 17 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP---RGLKMAATFIGNST 187
I +G +V + +L I+ + + F+ W P +++ A+ P +++ + N T
Sbjct: 323 IIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANHT 382
Query: 188 AIQELFKCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN---DLVSEYQ 340
+I LFK +Q+ + +R AFL Y E + E + E +S+ + DL++EY+
Sbjct: 383 SIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 28.3 bits (60), Expect = 0.60
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 179 NSTAIQELFKCISEQFTAMFRRKAFLHWYTGEGMDE 286
NS+ IQ L K I+ T +R ++ Y+G G+DE
Sbjct: 193 NSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 1.4
Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 17 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIG--NSTA 190
++ + ++ + + ++NI+ N S W+PN + +P G K++ I N +
Sbjct: 343 VYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLISMLNICS 402
Query: 191 IQELFK 208
+EL++
Sbjct: 403 KEELYE 408
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.0 bits (52), Expect = 5.6
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 173 IGNSTAIQELFKCISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 334
+ N + L+K + E+F+ +F RK L WY G+ E + N+N SE
Sbjct: 1703 LNNPHLLFTLYKLL-ERFSLIFLRKCALLWYCRYGVS----FETQPNLNFQNSE 1751
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 24.6 bits (51), Expect = 7.3
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +2
Query: 56 QMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIG 178
++ +I+ K S++ E +P + TAV P GL +A TF+G
Sbjct: 375 RLWSIKEKAVSFWNE-LPELI-TAVAFSPDGGLAIAGTFVG 413
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 24.2 bits (50), Expect = 9.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 157 LQSAGRDVAHGGLHVVRDPFHEVRRVLVLN 68
LQS R + GL +V P HE+ V LN
Sbjct: 1287 LQSWSRILERYGLKLVEAPIHEIAAVGELN 1316
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 24.2 bits (50), Expect = 9.7
Identities = 8/41 (19%), Positives = 22/41 (53%)
Frame = +2
Query: 104 IPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKCISEQF 226
+P V ++ ++PP ++ ++ G +++F+ E+F
Sbjct: 591 VPRQVFASMLNLPPEVIRRKGSWTGKKDPREDMFRSRFEKF 631
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,421,317
Number of Sequences: 5004
Number of extensions: 23737
Number of successful extensions: 89
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -