Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G24
         (356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   173   5e-45
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   0.86 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   1.1  
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma...    25   3.5  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    25   4.6  
SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyce...    24   6.1  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  173 bits (422), Expect = 5e-45
 Identities = 85/111 (76%), Positives = 93/111 (83%)
 Frame = +1

Query: 22  ATNISRKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 201
           A  IS+KRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLGE
Sbjct: 4   AFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGE 63

Query: 202 KGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGG 354
           KGRRIRELT++VQKRF   E +VELYAEKV  RGLCA+AQ ESLRYKL+ G
Sbjct: 64  KGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAG 114


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.1 bits (57), Expect = 0.86
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 287 FSAYSSTDCSGILNRFCTTDVSSR 216
           + +Y S+DC G+L+R   TD   R
Sbjct: 360 YPSYLSSDCKGLLSRMLVTDPLKR 383


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 169 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAI-AQAESLRYKL 345
           MATR Q       RR  E  + +QK +N  + ++EL  E+V   G   +  + +  RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWNRNKVNMEL--ERVRNEGTKLLQGKKQRRRYSI 783

Query: 346 IG 351
           +G
Sbjct: 784 LG 785


>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 193

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 111 GWLLRCGGAC 140
           GWL  CGGAC
Sbjct: 70  GWLHNCGGAC 79


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -1

Query: 347 INLYLRDSA*AIAQSPRVATFSAYSSTDCSGILNRFCTTDVSSRILRPFSPST 189
           + L L+    A+     ++      S+     +N F  T  SSR L PFS +T
Sbjct: 101 VRLPLKSDIEAVKSPKAISHLEEKKSSPKEKKVNPFAITSESSRGLNPFSDAT 153


>SPAPB1A10.03 |nxt1||mRNA export receptor Nxt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 264 VSGAIRREGSNPRALRYRS 320
           VSG IR +G  P    YRS
Sbjct: 81  VSGTIRFDGKKPHVFSYRS 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,407,173
Number of Sequences: 5004
Number of extensions: 24086
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)