Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G24
         (356 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal prote...   173   3e-44
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    29   0.72 
Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical pr...    29   0.95 
Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical pr...    29   0.95 
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    28   2.2  
U53344-4|AAA96225.2|  575|Caenorhabditis elegans Hypothetical pr...    27   2.9  
AF016437-1|AAB65884.2|  690|Caenorhabditis elegans Hypothetical ...    27   5.1  
Z49132-12|CAA88990.3|  931|Caenorhabditis elegans Hypothetical p...    26   6.7  
Z48716-7|CAA88602.3|  931|Caenorhabditis elegans Hypothetical pr...    26   6.7  
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu...    26   8.9  

>U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 3 protein.
          Length = 247

 Score =  173 bits (421), Expect = 3e-44
 Identities = 82/109 (75%), Positives = 96/109 (88%)
 Frame = +1

Query: 28  NISRKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKG 207
           N+++K+K V  G+FKAELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+VLGE+G
Sbjct: 6   NVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERG 65

Query: 208 RRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGG 354
           RRI+ELTSVVQKRF   E SVELYAEKV+ RGLCA+AQ ESLRYKL+GG
Sbjct: 66  RRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGG 114


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +1

Query: 181 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 300
           + S+ G+KG+ +REL + + K  ++ E++  + AE  A R
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435


>Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical
           protein M88.5b protein.
          Length = 704

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +1

Query: 103 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 264
           L   G  G    +  IR+E+ +       ++G+ G+ +REL  +      IPE+
Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 596


>Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical
           protein M88.5a protein.
          Length = 828

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +1

Query: 103 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 264
           L   G  G    +  IR+E+ +       ++G+ G+ +REL  +      IPE+
Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 720


>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical
           protein C05C10.2b protein.
          Length = 1553

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 19  MATNISRKRKFVGDGVFKAELNEFLTRELAEDGY 120
           ++ +I +K  F GDG F     E    E+ +DGY
Sbjct: 889 LSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922


>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical
           protein C05C10.2a protein.
          Length = 1551

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 19  MATNISRKRKFVGDGVFKAELNEFLTRELAEDGY 120
           ++ +I +K  F GDG F     E    E+ +DGY
Sbjct: 889 LSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922


>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -1

Query: 311 AQSPRVATFSAYSSTDCSGILNRFCTTDVSSRILRPFSPSTLCVLVA 171
           + +P   T  AY  T  SG++   C+ D +    RP      C ++A
Sbjct: 114 SNTPTSTTTCAYIKTSSSGLVFDSCSIDANVLCDRPLQKQDYCSIIA 160


>U53344-4|AAA96225.2|  575|Caenorhabditis elegans Hypothetical
           protein T07H6.5 protein.
          Length = 575

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 104 WPRMATPVWRCVS--HPYVQKSLLWPQGRRACLERKVVEFV 220
           W    +P  +CVS  HP ++  +LW + +R+   R V E+V
Sbjct: 501 WMPKVSP--KCVSQTHPMIEGKILWDRKKRSLPGRAVREYV 539


>AF016437-1|AAB65884.2|  690|Caenorhabditis elegans Hypothetical
           protein F13H6.1 protein.
          Length = 690

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 17/39 (43%), Positives = 19/39 (48%)
 Frame = -1

Query: 314 IAQSPRVATFSAYSSTDCSGILNRFCTTDVSSRILRPFS 198
           IA  P+VAT    + T     LNR  T D SS   RP S
Sbjct: 406 IAAQPQVATPQPPAPTPLFQSLNRLSTADESSYTPRPAS 444


>Z49132-12|CAA88990.3|  931|Caenorhabditis elegans Hypothetical
           protein F59B10.1 protein.
          Length = 931

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -3

Query: 255 DIKSLLHNRCQLTNSTTFLSKHALRPCGHNNDF*TYGCDTHLHTGVAI 112
           D KSL ++RC LT++ T  +    R   H        C + L  G  +
Sbjct: 613 DNKSLSYSRCSLTSTATNATSQPKRSRKHRAIKQAQSCGSRLSQGTVV 660


>Z48716-7|CAA88602.3|  931|Caenorhabditis elegans Hypothetical
           protein F59B10.1 protein.
          Length = 931

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -3

Query: 255 DIKSLLHNRCQLTNSTTFLSKHALRPCGHNNDF*TYGCDTHLHTGVAI 112
           D KSL ++RC LT++ T  +    R   H        C + L  G  +
Sbjct: 613 DNKSLSYSRCSLTSTATNATSQPKRSRKHRAIKQAQSCGSRLSQGTVV 660


>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
           (myotubularin) family protein 5 protein.
          Length = 1744

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 73  AELNEFLTRELAEDGYSGVEVRVTPIRSEI 162
           +EL  FLT EL E+G S +E+R   +  E+
Sbjct: 138 SELIRFLTYELVEEG-STIEIRTKTLHVEL 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,774,308
Number of Sequences: 27780
Number of extensions: 140312
Number of successful extensions: 360
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)