Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_G23
(444 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 88 3e-18
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 86 1e-17
03_05_0412 + 23993452-23994068,23996249-23996350,23996799-239969... 30 0.96
07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331 27 5.1
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251 27 5.1
09_04_0404 + 17322664-17322718,17323676-17323849,17324695-173248... 27 6.8
07_01_1167 + 11030200-11031165,11031273-11031407,11031509-11031874 27 9.0
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 88.2 bits (209), Expect = 3e-18
Identities = 54/131 (41%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Frame = +1
Query: 58 RTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTS 237
+ R +TPGTV ILLAGR+ GKR TGPF N P+RR+ Q YVI TS
Sbjct: 70 KLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIATS 129
Query: 238 TKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXPAEDIFATKKE--KYVPSEQRKADQKL 411
TKVD+ K+ DD YF ++F T+KE K +P + +K DQK
Sbjct: 130 TKVDISGVKVD-KFDDKYFARDKKAKAKKTEG----ELFETEKEATKNLP-DFKKDDQKA 183
Query: 412 VDDAVIKAIRL 444
VD +IKAI +
Sbjct: 184 VDAELIKAIEV 194
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 86.2 bits (204), Expect = 1e-17
Identities = 55/136 (40%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Frame = +1
Query: 37 SFSKHVRRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQ 216
S + + R ++TPGTV ILLAGR GKR TGPF N P+RR+ Q
Sbjct: 86 SLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVTGPFKINGVPIRRVNQ 145
Query: 217 RYVIGTSTKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXPAEDIFATKKE--KYVPSEQ 390
YVI TSTKVD+ + DD YF ++F T+KE K +P E
Sbjct: 146 PYVIATSTKVDISGVNV-EKFDDKYFSRDKKQKAKKTEG----ELFETEKEATKNLP-EF 199
Query: 391 RKADQKLVDDAVIKAI 438
+K DQK+VD +IKAI
Sbjct: 200 KKEDQKVVDAELIKAI 215
>03_05_0412 +
23993452-23994068,23996249-23996350,23996799-23996994,
23997075-23997259,23997394-23997498,23997625-23997722,
23997832-23998067,23998314-23998382,23999768-23999833,
24000513-24000611,24000688-24000750
Length = 611
Score = 29.9 bits (64), Expect = 0.96
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 218 RCGILRRGHALKAKGPVKSSRPLGNTPTSTT 126
RCG+ ++GH A GP + P ++ +TT
Sbjct: 23 RCGLPKKGHVCAAGGPAPTPSPSSSSGAATT 53
>07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331
Length = 599
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 173 PVKSSRPLGNTPTSTTRLPACLPANRMHTVPGVRLGLVLR 54
P ++ P+ +TP+ T + CLPA+R T R +LR
Sbjct: 258 PTWTTSPILSTPSHTWQRSLCLPASRSFTPRKSRRDQLLR 297
>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
Length = 1821
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -2
Query: 173 PVKSSRPLGNTPTSTTRLPACLPANRMHTVPGVRLG 66
P+KS+ P GN TTRL + A R+ TV + LG
Sbjct: 440 PLKSNHPKGNMILVTTRLLSL--AQRIGTVKPIELG 473
>09_04_0404 +
17322664-17322718,17323676-17323849,17324695-17324876,
17325312-17325417,17325708-17325784,17326485-17326572,
17327320-17327509,17328353-17328479,17328584-17328664,
17328815-17328916,17329042-17329137,17329279-17329353,
17329746-17329865,17330319-17330447,17330762-17330839,
17331330-17331416,17333538-17333651,17334294-17334362,
17334741-17334785
Length = 664
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 360 GSKDVLCRLPLDAAIHALLVLLKVG 286
G+K+ RLPLDA A+ ++ VG
Sbjct: 345 GAKETAARLPLDAGFEAVGIVASVG 369
>07_01_1167 + 11030200-11031165,11031273-11031407,11031509-11031874
Length = 488
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -2
Query: 218 RCGILRRGHALKAKGPVKSSRPLGNTPTSTTRLP--ACLPANRMHTV 84
RCG ++GH A PL +P ++ + LP + +HT+
Sbjct: 19 RCGFPKKGHVCAAAAAAPGDLPLLPSPEEEEKVDGISALPDDVVHTI 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,791,571
Number of Sequences: 37544
Number of extensions: 221899
Number of successful extensions: 653
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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