Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G22
         (253 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   1.2  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    24   2.7  
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|...    24   2.7  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    23   4.7  
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    23   8.2  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    23   8.2  

>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -3

Query: 143 INCLIVKRSSNRYTFQFSISMFHIYLIFYHLPY 45
           +N LI  +SSN+   + S + + + +++Y + Y
Sbjct: 262 LNSLIHDKSSNKLYMKTSFTTYEVAVVYYRVGY 294


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 170 NKPFLLDVFINCLIVKRSSNRYTFQ-FSISMFHIYLIFYHLPYQ 42
           N PFL    +NCL+  R+      + F+ +   I   FY L Y+
Sbjct: 213 NVPFLTQDIVNCLVSIRTCMLNAKKCFTDAFCEILRCFYRLVYE 256


>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 403

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 79  NIDIEN*NVYRLLERFTIKQLMKTSNKNGL 168
           N+ I+  N YR+  R  ++ L + SNK+ L
Sbjct: 231 NMQIQQVNTYRIRMREIVETLGRLSNKHDL 260


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 59  YHLPYQQ*RLNITVQFS 9
           YHL +QQ R+N+   FS
Sbjct: 285 YHLAFQQARINVQQGFS 301


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 140 NCLIVKRSSNRYTFQFSISMFHIYLIFYH 54
           NC +V     RY  + SI+M  I  I  H
Sbjct: 126 NCSVVLEDQKRYRIRASINMDSIIDITVH 154


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 143 INCLIVKRSSNRYTFQFSISMFHIYLIFYHL 51
           I CL+      RY  + S+ +F   + FYH+
Sbjct: 71  IRCLLYMTEHPRYENRPSVYLFDRKMNFYHV 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 908,415
Number of Sequences: 5004
Number of extensions: 14693
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 47431474
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)