Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G22
         (253 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC032713-1|AAH32713.1| 1032|Homo sapiens toll-like receptor 9 pr...    27   8.3  
AF259263-1|AAF72190.1|  975|Homo sapiens toll-like receptor 9 fo...    27   8.3  
AF259262-1|AAF72189.1| 1032|Homo sapiens toll-like receptor 9 fo...    27   8.3  
AF245704-1|AAF78037.1| 1032|Homo sapiens toll-like receptor 9 pr...    27   8.3  
AB045180-1|BAB19259.1| 1032|Homo sapiens toll-like receptor 9 pr...    27   8.3  

>BC032713-1|AAH32713.1| 1032|Homo sapiens toll-like receptor 9
           protein.
          Length = 1032

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 124 NVQVIDIHFNFLYRCSTFISSF 59
           N++V+D+  NFLY+C T   +F
Sbjct: 309 NLRVLDLSENFLYKCITKTKAF 330


>AF259263-1|AAF72190.1|  975|Homo sapiens toll-like receptor 9 form
           B protein.
          Length = 975

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 124 NVQVIDIHFNFLYRCSTFISSF 59
           N++V+D+  NFLY+C T   +F
Sbjct: 252 NLRVLDLSENFLYKCITKTKAF 273


>AF259262-1|AAF72189.1| 1032|Homo sapiens toll-like receptor 9 form
           A protein.
          Length = 1032

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 124 NVQVIDIHFNFLYRCSTFISSF 59
           N++V+D+  NFLY+C T   +F
Sbjct: 309 NLRVLDLSENFLYKCITKTKAF 330


>AF245704-1|AAF78037.1| 1032|Homo sapiens toll-like receptor 9
           protein.
          Length = 1032

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 124 NVQVIDIHFNFLYRCSTFISSF 59
           N++V+D+  NFLY+C T   +F
Sbjct: 309 NLRVLDLSENFLYKCITKTKAF 330


>AB045180-1|BAB19259.1| 1032|Homo sapiens toll-like receptor 9
           protein.
          Length = 1032

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 124 NVQVIDIHFNFLYRCSTFISSF 59
           N++V+D+  NFLY+C T   +F
Sbjct: 309 NLRVLDLSENFLYKCITKTKAF 330


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,814,213
Number of Sequences: 237096
Number of extensions: 426031
Number of successful extensions: 385
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 76,859,062
effective HSP length: 61
effective length of database: 62,396,206
effective search space used: 1372716532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)