Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G22
         (253 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical pr...    25   5.4  
U58753-6|AAC24440.1|  705|Caenorhabditis elegans Hypothetical pr...    25   5.4  
AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical ...    25   7.1  

>Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical
           protein C38C10.5b protein.
          Length = 1374

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 143 INCLIVKRSSNRYTFQFSISMFHIYLI 63
           I C +   + NRYTFQF +   +I L+
Sbjct: 612 IRCCLRLDNRNRYTFQFEMCFENIPLV 638


>Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical
           protein C38C10.5a protein.
          Length = 1368

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 143 INCLIVKRSSNRYTFQFSISMFHIYLI 63
           I C +   + NRYTFQF +   +I L+
Sbjct: 612 IRCCLRLDNRNRYTFQFEMCFENIPLV 638


>Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical
           protein C38C10.5b protein.
          Length = 1374

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 143 INCLIVKRSSNRYTFQFSISMFHIYLI 63
           I C +   + NRYTFQF +   +I L+
Sbjct: 612 IRCCLRLDNRNRYTFQFEMCFENIPLV 638


>Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical
           protein C38C10.5a protein.
          Length = 1368

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 143 INCLIVKRSSNRYTFQFSISMFHIYLI 63
           I C +   + NRYTFQF +   +I L+
Sbjct: 612 IRCCLRLDNRNRYTFQFEMCFENIPLV 638


>U58753-6|AAC24440.1|  705|Caenorhabditis elegans Hypothetical
           protein W03B1.8 protein.
          Length = 705

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -3

Query: 173 INKPFLLDVFINCLIVKRSSNRYT 102
           +++ F+L  F+ C+++KRS N+ T
Sbjct: 43  VDQFFVLSGFLMCMLLKRSENKPT 66


>AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical
           protein Y55F3C.9 protein.
          Length = 711

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 155 LDVFINCLIVKRSSN--RYTFQFSISMFHIY 69
           LDVF+ C +  R+ N  +Y    + S +HI+
Sbjct: 649 LDVFVKCTVKSRNQNFSQYFTGMNQSAYHIF 679


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,987,525
Number of Sequences: 27780
Number of extensions: 81599
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 219801160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)