Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G21
         (214 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    25   1.8  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    24   2.4  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    24   2.4  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    24   2.4  
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar...    23   4.2  
SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac...    23   4.2  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    23   4.2  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    23   5.5  
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    23   5.5  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    23   5.5  
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch...    23   5.5  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    23   7.3  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    23   7.3  
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    22   9.6  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    22   9.6  

>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 11  IRHEGNTTRRRVTPASTSLARVASTVSPMIWASYSSNN 124
           I H  NT+++ V+   T +A  A+  SP++  SY+ N+
Sbjct: 165 IVHRCNTSQQEVSHTHTQVADSATESSPLL--SYTGNH 200


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 122 CLRNTTPISLGILSKPHALM 63
           CL    P SL +++K HALM
Sbjct: 3   CLLREKPRSLALVNKDHALM 22


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 66  NDVDAGVTRLRVVFPS 19
           N+ DAG  RLRV FP+
Sbjct: 67  NNYDAGTRRLRVDFPT 82


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 127 FGGTLNSVESYLSTDMPTELTAEAA 201
           FGG  N+++S  +T  PT   A  A
Sbjct: 450 FGGNFNNMQSRSTTTSPTSAVASPA 474


>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 289

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 99  IIGDTVEATRANDV 58
           ++G  VEA RAND+
Sbjct: 121 VVGSLVEAARANDI 134


>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
           Smf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 78

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 121 QHFGGTLNSVESYLSTD-MPTELTAEAAKSG 210
           Q + GTL SV+SY++   +  E   +  K+G
Sbjct: 28  QEYKGTLQSVDSYMNLQLLNAEELVDGVKTG 58


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +1

Query: 118 KQHFGGTLNSVESY 159
           K+H+ G +NS+ES+
Sbjct: 490 KKHYEGVMNSIESF 503


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -2

Query: 174 HVRTQV*LNRVQSSSKVLFEEYDAHIIGDTVEATRAND 61
           HV+  +     + +   +++ YDA ++G+ +   R ND
Sbjct: 68  HVQDVIRSRLKEETVPAIYKNYDASLLGNALLDIRKND 105


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 142 NSVESYLSTDMPTELTAEAAKS 207
           + V+S+ STD  T++  EAA S
Sbjct: 23  SDVDSFTSTDNVTQINVEAAIS 44


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 91  PNDMGVVFLKQHFGGTLNSVESYLSTD 171
           PN   + F+   F   L S E+Y+ T+
Sbjct: 665 PNPESITFISSKFVDHLQSNENYIQTE 691


>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 261

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 147 RVQSSSKVLFEEYDAHIIGD 88
           R++S  KV   ++D H+IGD
Sbjct: 78  RLRSMIKVWDPDHDRHVIGD 97


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 53  ASTSLARVASTVSPMIWASYSSNNT 127
           A+T  +  AST SP  + S ++NNT
Sbjct: 74  ATTGNSTNASTSSPFSFGSTNTNNT 98


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 83  TVSPMIWASYSSNNTL 130
           T+ P+ W S S N+TL
Sbjct: 86  TLKPLYWPSASKNDTL 101


>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +3

Query: 99  YGRRIPQTTLWRNFEL 146
           Y +RIP + +WR+ ++
Sbjct: 169 YDQRIPNSCIWRDIQV 184


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 128 KCCLRNTTPISLGILSKPH 72
           K  L+N+TP++ G+ S  H
Sbjct: 450 KANLKNSTPLTNGVTSSGH 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 739,944
Number of Sequences: 5004
Number of extensions: 11037
Number of successful extensions: 33
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)