Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G21
         (214 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1142 + 24287674-24288357,24291451-24292137                       38   0.001
07_03_1779 - 29458889-29459249,29461107-29461283,29461374-294615...    29   0.51 
12_01_1073 + 11135853-11137388,11137627-11137846,11137990-111381...    28   0.89 
10_08_0824 + 20821724-20822137,20822457-20822543,20822729-208228...    25   8.3  
03_05_0136 + 21158917-21159939,21160183-21160241,21160259-211602...    25   8.3  

>07_03_1142 + 24287674-24288357,24291451-24292137
          Length = 456

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +1

Query: 25  EYDAQARDAGVYIISACGFDSIPNDMGVVFLKQHFG--GTLNSVESYLSTD 171
           E+   A   G  IISACGFDSIP ++G +F  + +       +V++YLS +
Sbjct: 139 EFHEAAAKNGSLIISACGFDSIPAELGFLFHSRQWAPPSVPVTVQAYLSLE 189


>07_03_1779 -
           29458889-29459249,29461107-29461283,29461374-29461573,
           29461673-29462752
          Length = 605

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 1   CCRYSARGEYDAQARDAGVYIISACGF 81
           C  Y  R  YDA  R+A +Y  S CGF
Sbjct: 243 CELYKGRWVYDAAGREAPLYRESECGF 269


>12_01_1073 +
           11135853-11137388,11137627-11137846,11137990-11138178,
           11138257-11138457,11138547-11139246,11163479-11164106
          Length = 1157

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 50  PASTSLARVASTVSPMIWASYSSNNTLEEL 139
           PA+ SL++ AS    MIW + SSN    +L
Sbjct: 29  PATNSLSKYASPSDNMIWETASSNGVAMDL 58


>10_08_0824 +
           20821724-20822137,20822457-20822543,20822729-20822829,
           20822917-20822967,20823616-20823790,20823878-20824192,
           20824504-20824707,20824799-20825314,20825400-20825609,
           20826092-20826280,20827254-20827405,20827685-20827837,
           20827925-20828006,20828086-20828475
          Length = 1012

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 34  AQARDAGVYIISACGFDSIPNDMGVVFLKQHFGGTLNSVESYLST 168
           A+ ++ GV  I  CG D+   +     L  H G  L SV+ +  T
Sbjct: 356 AKTKNLGVQFIFFCGNDTDAYNSAFQELASHMGFPLGSVKHFSLT 400


>03_05_0136 +
           21158917-21159939,21160183-21160241,21160259-21160294,
           21160345-21160387,21160582-21160698,21162090-21162179,
           21162329-21162436,21162547-21162588
          Length = 505

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 17  HEGNTTRRRVTPASTSLARVASTVS 91
           + GNT+ R+ +P+ +S A  AST S
Sbjct: 65  NSGNTSTRKASPSPSSPAPAASTPS 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.132    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,846,538
Number of Sequences: 37544
Number of extensions: 71258
Number of successful extensions: 225
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)