Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_G20
(261 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 25 2.2
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 24 2.9
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo... 24 3.8
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 24 3.8
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 23 5.1
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 23 6.7
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c... 23 6.7
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 23 6.7
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 23 8.8
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 23 8.8
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 23 8.8
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 24.6 bits (51), Expect = 2.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 158 VGCTPFFYERTPRVVQCA 211
V CTP E+T RVV C+
Sbjct: 550 VTCTPEISEKTGRVVDCS 567
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 24.2 bits (50), Expect = 2.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 64 ILLTSSIEPAQLGFQCFTVRQERFL 138
ILL +EP+Q GFQ + FL
Sbjct: 127 ILLVPGLEPSQFGFQPVRGNKHSFL 151
>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 23.8 bits (49), Expect = 3.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 167 TPFFYERTPRVVQCARRAGVRGEWSATV 250
T F +E P V+ RRA ++ WS V
Sbjct: 270 TVFCWEINPWSVEALRRAALKNGWSIYV 297
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 23.8 bits (49), Expect = 3.8
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 254 RGPSRSTPPARRHGAHTAP-PVASFHKKMAYILHTKS 147
R P ST PAR AH+ P +F+ +IL T S
Sbjct: 265 RRPDASTKPARSVHAHSGPIHSVAFNPHNDFILATCS 301
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 23.4 bits (48), Expect = 5.1
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 203 QCARRAGVRGEWSATVPS 256
Q AR GVR W VPS
Sbjct: 91 QIARHEGVRSLWRGLVPS 108
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 23.0 bits (47), Expect = 6.7
Identities = 6/13 (46%), Positives = 10/13 (76%)
Frame = -3
Query: 208 TLHHPWRPFIKKW 170
++H WR F+K+W
Sbjct: 39 SVHDLWRRFVKRW 51
>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 315
Score = 23.0 bits (47), Expect = 6.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 242 RSTPPARRHGAHTAPPVASFHKKMAYILHTKS 147
+S PP RR+ A P++S + +AY L K+
Sbjct: 8 QSLPPTRRYTISLALPISSLN--VAYNLQLKT 37
>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 23.0 bits (47), Expect = 6.7
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 133 FLG*SDLVCRMYAIFL*KDATGGAVCAPCRRAG 231
F+G LV + FL AT G +CAP R G
Sbjct: 176 FVGLRGLVWSVPLWFLFWPATVGILCAPGRHEG 208
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 22.6 bits (46), Expect = 8.8
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -2
Query: 233 PPARRHGAHTAPP 195
PP + H HT PP
Sbjct: 164 PPTQHHHPHTRPP 176
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 22.6 bits (46), Expect = 8.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -3
Query: 217 TARTLHHPWRPFIKKWRTSYI 155
++R L W I+ W TSY+
Sbjct: 30 SSRELGVKWNSDIRSWMTSYV 50
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 22.6 bits (46), Expect = 8.8
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +3
Query: 174 FFMKGRHGWCS 206
+FM HGWCS
Sbjct: 548 YFMYINHGWCS 558
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,117,217
Number of Sequences: 5004
Number of extensions: 18777
Number of successful extensions: 37
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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