Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_G20
(261 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1139 - 9024609-9024708,9024832-9024910,9025083-9025252,902... 28 0.90
04_03_0884 + 20543084-20543638 27 2.7
03_02_0086 - 5549758-5549948,5550053-5550137 27 2.7
08_02_1237 + 25475219-25475916,25476127-25476320,25476407-254773... 26 3.6
06_03_0291 + 19198302-19198333,19199218-19199734,19200171-192003... 26 3.6
01_01_0668 - 5109476-5110112,5110196-5110439,5110519-5110917,511... 26 3.6
11_06_0184 - 21006659-21009823 26 4.8
03_04_0114 + 17386943-17387248 26 4.8
08_02_1065 - 24044466-24045276,24045380-24045509,24045833-24045965 25 6.3
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 25 6.3
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 25 6.3
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 25 8.4
06_03_0614 - 22753092-22753349,22754059-22754277,22754712-227549... 25 8.4
06_01_0953 + 7344095-7344444,7344978-7345049,7345136-7345208,734... 25 8.4
03_06_0031 + 31178063-31178323,31178975-31179093,31179182-311793... 25 8.4
03_01_0650 - 4762354-4763247 25 8.4
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697... 25 8.4
01_06_0859 + 32519587-32520039 25 8.4
>01_01_1139 -
9024609-9024708,9024832-9024910,9025083-9025252,
9025339-9025451,9025518-9025586,9025867-9025944,
9026022-9026084,9026590-9026670,9027166-9027222,
9027352-9027705
Length = 387
Score = 28.3 bits (60), Expect = 0.90
Identities = 7/27 (25%), Positives = 16/27 (59%)
Frame = +2
Query: 173 FFYERTPRVVQCARRAGVRGEWSATVP 253
FF+++ P + + + G++G W +P
Sbjct: 158 FFFKKEPAIAEIGKEEGLKGYWKGNLP 184
>04_03_0884 + 20543084-20543638
Length = 184
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -2
Query: 257 GRGPSRSTPPARRHGAHTAPPVASFHKKMAYILH 156
G GP PP H APP KMA ++H
Sbjct: 8 GMGPMAMAPPRSGHATAAAPPPP--QHKMAMMMH 39
>03_02_0086 - 5549758-5549948,5550053-5550137
Length = 91
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 260 SGRGPSRSTPPARRHGAHTAP 198
+G G R+ PPARRH P
Sbjct: 58 AGAGAGRAAPPARRHSRFRQP 78
>08_02_1237 +
25475219-25475916,25476127-25476320,25476407-25477302,
25477416-25477490,25477582-25477689,25477780-25477897,
25478007-25478142,25478228-25478372,25478460-25479080,
25479166-25479597
Length = 1140
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 238 PLPPHAGTARTLHHPW 191
PLPPHA A+ +PW
Sbjct: 20 PLPPHATAAKKRGNPW 35
>06_03_0291 +
19198302-19198333,19199218-19199734,19200171-19200383,
19201067-19201111,19201671-19201945,19202041-19202152,
19202453-19202539,19202727-19202963,19204127-19204825
Length = 738
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 217 TARTLHHPWRPFIKKWRTSYILN-RFNLRISPV 122
T RTLH P PF++ W ++L+ F + + P+
Sbjct: 64 TTRTLH-PQGPFLQSWNKIFVLSCIFAVSVDPL 95
>01_01_0668 -
5109476-5110112,5110196-5110439,5110519-5110917,
5111390-5111668,5111886-5112257,5112371-5112475,
5112832-5112909,5112990-5113199,5113287-5113406,
5113508-5113606,5113685-5113750,5113914-5114141,
5114216-5114521,5115324-5115381
Length = 1066
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -2
Query: 248 PSRSTPPARRHGAHTAPPVASFHKKMAYILHTKSL*P 138
P TPPA H A APP A+ + T +L P
Sbjct: 128 PVELTPPAPTHVAPVAPPQAAVENPAPVLPGTPALLP 164
>11_06_0184 - 21006659-21009823
Length = 1054
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 256 GGDRRAPLPPHAGTARTL 203
GGD+ PLPP G R L
Sbjct: 271 GGDKDQPLPPDCGVKRQL 288
>03_04_0114 + 17386943-17387248
Length = 101
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 117 GATGEILRLKRFSM*DVRHFFMKGRHGWCSVRAVPACGGSGAR 245
GA G + RL + + +GRHG C R V +GAR
Sbjct: 27 GAAGVVQRLVGAHGTEAQPVVSEGRHGTCDRRKVVMVQTTGAR 69
>08_02_1065 - 24044466-24045276,24045380-24045509,24045833-24045965
Length = 357
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = +3
Query: 162 DVRHFFMKGRHGWCSVRA-VPACGGSGARRSP 254
DV M WCS A +CGG G SP
Sbjct: 309 DVTTTTMTNPLDWCSATASASSCGGGGGASSP 340
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 167 YILHTKSL*PKNLSCRTVKHWKPSC 93
Y+ TKSL K + CRT K + +C
Sbjct: 2255 YMFCTKSLLAKMMKCRTTKGYFETC 2279
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 251 GPSRSTPPARRHGAHTAPPVASFHKKM 171
G T PAR HG TA V S ++K+
Sbjct: 184 GTVEPTTPARHHGPTTADLVGSPYRKL 210
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 251 GPSRSTPPARRHGAHTAPPVA 189
G RS PP R G+ TA P+A
Sbjct: 384 GIMRSRPPPRSRGSRTAYPLA 404
>06_03_0614 -
22753092-22753349,22754059-22754277,22754712-22754960,
22755186-22755275,22755379-22755456,22755562-22756337,
22757042-22757384
Length = 670
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -3
Query: 232 PPHAGTARTLHHPWRPF 182
PPH G R LH+P + F
Sbjct: 498 PPHGGMPRHLHNPHQMF 514
>06_01_0953 +
7344095-7344444,7344978-7345049,7345136-7345208,
7345323-7345347,7345882-7345921,7346201-7346270,
7346475-7346558
Length = 237
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 245 SRSTPPARRHGAHTAPPVASFHKKMAYI 162
SR +PPARR + P V HK + I
Sbjct: 18 SRRSPPARRKDPFSPPKVHRSHKLLLEI 45
>03_06_0031 +
31178063-31178323,31178975-31179093,31179182-31179368,
31179455-31179601,31179686-31179802,31180017-31180307
Length = 373
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 132 ILRLKRFSM*DVRHFFMKGRHGWCSVRAVPACGGSGARR 248
+LRL + R GRHG C+ R VP G S RR
Sbjct: 8 VLRLAASAAATARPQSRSGRHGSCAAR-VPCPGPSPFRR 45
>03_01_0650 - 4762354-4763247
Length = 297
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = -2
Query: 257 GRGPSRSTPPARRHGAHTAPPV-ASFHKKMAYILHTKSL 144
G + P RR GAH PP+ A+ K+ I H L
Sbjct: 160 GESARLNFPELRRGGAHLGPPLHAAVDAKLHAICHGMDL 198
>02_02_0119 +
6978697-6979045,6979519-6979581,6979757-6979866,
6979969-6980154,6980266-6980361,6980493-6980564,
6980798-6980909,6982448-6982534,6982680-6983872
Length = 755
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 236 TPPARRHGAHTAPPVAS 186
+PP RR G +APP AS
Sbjct: 16 SPPPRRTGFSSAPPAAS 32
>01_06_0859 + 32519587-32520039
Length = 150
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 186 GRHGWCSVRAVPACGGSGARR 248
GRHG A A GG+G R+
Sbjct: 5 GRHGMAMAMAPAAAGGAGRRK 25
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,517,584
Number of Sequences: 37544
Number of extensions: 162907
Number of successful extensions: 687
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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