Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G20
         (261 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BX276189-2|CAI95730.1| 1034|Homo sapiens teashirt family zinc fi...    28   4.7  
AL121902-2|CAI95385.1| 1034|Homo sapiens teashirt family zinc fi...    28   4.7  
AK091206-1|BAC03610.1| 1034|Homo sapiens protein ( Homo sapiens ...    28   4.7  
AL357673-1|CAH73896.1|  449|Homo sapiens novel transcript protein.     27   8.2  

>BX276189-2|CAI95730.1| 1034|Homo sapiens teashirt family zinc
           finger 2 protein.
          Length = 1034

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = -2

Query: 155 TKSL*PKNLSCRTVKHWKPSCAGSMLLVNNMDKNCNSVFTIHSRY 21
           +KSL  +NL  R+V   KPS   S+ L     K C +VFT  SR+
Sbjct: 174 SKSL-QQNLPSRSVS--KPSLFSSVQLYRQSSKMCGTVFTGASRF 215


>AL121902-2|CAI95385.1| 1034|Homo sapiens teashirt family zinc
           finger 2 protein.
          Length = 1034

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = -2

Query: 155 TKSL*PKNLSCRTVKHWKPSCAGSMLLVNNMDKNCNSVFTIHSRY 21
           +KSL  +NL  R+V   KPS   S+ L     K C +VFT  SR+
Sbjct: 174 SKSL-QQNLPSRSVS--KPSLFSSVQLYRQSSKMCGTVFTGASRF 215


>AK091206-1|BAC03610.1| 1034|Homo sapiens protein ( Homo sapiens
           cDNA FLJ33887 fis, clone CTONG2007400, highly similar to
           Mus musculus teashirt 2 (Tsh2) gene. ).
          Length = 1034

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = -2

Query: 155 TKSL*PKNLSCRTVKHWKPSCAGSMLLVNNMDKNCNSVFTIHSRY 21
           +KSL  +NL  R+V   KPS   S+ L     K C +VFT  SR+
Sbjct: 174 SKSL-QQNLPSRSVS--KPSLFSSVQLYRQSSKMCGTVFTGASRF 215


>AL357673-1|CAH73896.1|  449|Homo sapiens novel transcript protein.
          Length = 449

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 215 GAHTAPPVASFHKKMAYILHT 153
           G H  PPV S H ++  +LHT
Sbjct: 337 GHHLPPPVTSSHNQLLLLLHT 357


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,345,610
Number of Sequences: 237096
Number of extensions: 770476
Number of successful extensions: 2115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2114
length of database: 76,859,062
effective HSP length: 64
effective length of database: 61,684,918
effective search space used: 1357068196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)