Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G20
         (261 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    29   0.34 
AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical ...    29   0.60 
Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical pr...    28   0.79 
Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical pr...    28   0.79 
Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical pr...    28   0.79 
Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical pr...    28   0.79 
Z81562-3|CAB04557.1|  352|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z81462-7|CAB03845.1| 1008|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z81457-12|CAB03819.1| 1008|Caenorhabditis elegans Hypothetical p...    25   7.4  
AF286900-1|AAG01333.1| 1008|Caenorhabditis elegans sex determini...    25   7.4  
AF099915-1|AAC68771.1|  460|Caenorhabditis elegans Hypothetical ...    25   7.4  
AF016688-6|AAB66074.2|  274|Caenorhabditis elegans Hypothetical ...    25   7.4  
U80843-12|AAB37961.2|  317|Caenorhabditis elegans Hypothetical p...    25   9.8  
U61944-5|AAB03121.2|  482|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -2

Query: 257 GRGPSRSTPPARRHGAHTAPPVASF 183
           G GP  S PP  R G H  PP  SF
Sbjct: 763 GAGPMSSFPPPPRGGMHHMPPPPSF 787


>AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical
           protein Y37H9A.3 protein.
          Length = 792

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 238 PLPPHAGTARTLHHPWRPFIKK 173
           PLPP A TA+  HHP  P I++
Sbjct: 204 PLPPPAPTAQPAHHPPAPPIRQ 225


>Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical
           protein C38C10.5b protein.
          Length = 1374

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 164 ILHTKSL*PKNLSCRTVKHWKPSCAGSMLLVNNMDKNCNSV 42
           IL  K L    ++ R V  ++P CAG   L +N+D    ++
Sbjct: 862 ILEIKLLEGCKIAVRDVSRYRPRCAGLFQLFSNIDSETTAI 902


>Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical
           protein C38C10.5a protein.
          Length = 1368

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 164 ILHTKSL*PKNLSCRTVKHWKPSCAGSMLLVNNMDKNCNSV 42
           IL  K L    ++ R V  ++P CAG   L +N+D    ++
Sbjct: 856 ILEIKLLEGCKIAVRDVSRYRPRCAGLFQLFSNIDSETTAI 896


>Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical
           protein C38C10.5b protein.
          Length = 1374

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 164 ILHTKSL*PKNLSCRTVKHWKPSCAGSMLLVNNMDKNCNSV 42
           IL  K L    ++ R V  ++P CAG   L +N+D    ++
Sbjct: 862 ILEIKLLEGCKIAVRDVSRYRPRCAGLFQLFSNIDSETTAI 902


>Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical
           protein C38C10.5a protein.
          Length = 1368

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 164 ILHTKSL*PKNLSCRTVKHWKPSCAGSMLLVNNMDKNCNSV 42
           IL  K L    ++ R V  ++P CAG   L +N+D    ++
Sbjct: 856 ILEIKLLEGCKIAVRDVSRYRPRCAGLFQLFSNIDSETTAI 896


>Z81562-3|CAB04557.1|  352|Caenorhabditis elegans Hypothetical
           protein K03D7.6 protein.
          Length = 352

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 208 TLHHPWRPFIKKWRTSYILNRFNLRISPVAP*NIGNRAAR 89
           T+H P+R  I +  T     + ++R+SP++     N   R
Sbjct: 312 TVHRPYRKAINQMITDLKKRKSSIRVSPISVHGTSNSVTR 351


>Z81462-7|CAB03845.1| 1008|Caenorhabditis elegans Hypothetical
           protein C04H5.6 protein.
          Length = 1008

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = +3

Query: 81  HRTRAARFPMFHGATGEILRLKRFSM*D 164
           +R +   +   HG  G+++++KR+ + D
Sbjct: 244 YRKKVLEYTKAHGKAGDVMKMKRYHLPD 271


>Z81457-12|CAB03819.1| 1008|Caenorhabditis elegans Hypothetical
           protein C04H5.6 protein.
          Length = 1008

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = +3

Query: 81  HRTRAARFPMFHGATGEILRLKRFSM*D 164
           +R +   +   HG  G+++++KR+ + D
Sbjct: 244 YRKKVLEYTKAHGKAGDVMKMKRYHLPD 271


>AF286900-1|AAG01333.1| 1008|Caenorhabditis elegans sex determining
           protein MOG-4 protein.
          Length = 1008

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = +3

Query: 81  HRTRAARFPMFHGATGEILRLKRFSM*D 164
           +R +   +   HG  G+++++KR+ + D
Sbjct: 244 YRKKVLEYTKAHGKAGDVMKMKRYHLPD 271


>AF099915-1|AAC68771.1|  460|Caenorhabditis elegans Hypothetical
           protein E02H9.6 protein.
          Length = 460

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 185 FHKKMAYILHTKSL*PKNLSCRTVKHWK 102
           +HKK  Y+  TK+L  KNL+ +  ++ K
Sbjct: 384 YHKKDKYLKETKNLELKNLNSKNFENSK 411


>AF016688-6|AAB66074.2|  274|Caenorhabditis elegans Hypothetical
           protein F18A12.2 protein.
          Length = 274

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
 Frame = -3

Query: 232 PPHAGT--ARTLHHPWRPFI 179
           PP+  T   +T++HPW P+I
Sbjct: 148 PPNEPTWLDKTIYHPWTPYI 167


>U80843-12|AAB37961.2|  317|Caenorhabditis elegans Hypothetical
           protein C32B5.5 protein.
          Length = 317

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 100 GFQCFTVRQERFLG*SDLVCRMYAIFL*KDATGGAVCAPCRRA 228
           G  CF++  E F+G SD+    Y  F   D T GAV     R+
Sbjct: 222 GHFCFSIVIEYFMGDSDIENGTYYTF---DTTRGAVFVVMERS 261


>U61944-5|AAB03121.2|  482|Caenorhabditis elegans Hypothetical
           protein T12E12.1 protein.
          Length = 482

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/34 (29%), Positives = 13/34 (38%)
 Frame = -2

Query: 128 SCRTVKHWKPSCAGSMLLVNNMDKNCNSVFTIHS 27
           SC T+K W   CA      N +  +       HS
Sbjct: 259 SCETIKQWMTKCADDSETANYISAHTKDCPQCHS 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,567,452
Number of Sequences: 27780
Number of extensions: 117617
Number of successful extensions: 325
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,740,198
effective HSP length: 65
effective length of database: 10,934,498
effective search space used: 229624458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)