Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G20
         (261 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   0.47 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   0.82 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   4.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   4.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    19   7.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 0.47
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 250  DRRAPLPPHAGTARTLHH 197
            +RR P PP  G+A  L H
Sbjct: 1698 NRRCPPPPRMGSAEGLSH 1715


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 0.82
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 248 PSRSTPPARRHGAHTAPP 195
           P R + P  +HG HT  P
Sbjct: 328 PHRGSSPHHQHGNHTMGP 345


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = -3

Query: 196 PWRPFIKKWRTSYIL 152
           PWR     W T Y L
Sbjct: 135 PWRTCGNPWNTRYCL 149


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = -3

Query: 196 PWRPFIKKWRTSYIL 152
           PWR     W T Y L
Sbjct: 188 PWRTCGNPWNTRYCL 202


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 248 PSRSTPPARR 219
           P R TPP+R+
Sbjct: 395 PPRQTPPSRK 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,776
Number of Sequences: 438
Number of extensions: 1465
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4762122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)