Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G19
         (426 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   178   2e-47
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   175   1e-46
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   159   2e-41
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   126   1e-31
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    33   0.001
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   2.5  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   3.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   5.8  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  178 bits (433), Expect = 2e-47
 Identities = 95/132 (71%), Positives = 103/132 (78%), Gaps = 5/132 (3%)
 Frame = +1

Query: 46  MGKKGSHT--LRIGHVT--RQVTHWSLDLQMRWYRQRXIEKFEKEAQKWVR-FLQIAWVL 210
           MGK+  H   + IGHV   +  T   L  +     +R IEKFEKEAQ+  +   + AWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 211 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 390
           DKLKAERERGITIDIALWKFET KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT
Sbjct: 61  DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120

Query: 391 GEFEAGISKNGQ 426
           GEFEAGISKNGQ
Sbjct: 121 GEFEAGISKNGQ 132


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  175 bits (427), Expect = 1e-46
 Identities = 94/132 (71%), Positives = 102/132 (77%), Gaps = 5/132 (3%)
 Frame = +1

Query: 46  MGKKGSHT--LRIGHVT--RQVTHWSLDLQMRWYRQRXIEKFEKEAQKWVR-FLQIAWVL 210
           MGK+  H   + IGHV   +  T   L  +     +R IEKFEKEAQ+  +   + AWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 211 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 390
           DKLKAERERGITIDIALWKFET KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 
Sbjct: 61  DKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGI 120

Query: 391 GEFEAGISKNGQ 426
           GEFEAGISKNGQ
Sbjct: 121 GEFEAGISKNGQ 132


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  159 bits (385), Expect = 2e-41
 Identities = 74/75 (98%), Positives = 74/75 (98%)
 Frame = +1

Query: 202 WVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 381
           WVLDKLKAERERGITIDIALWKFET KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 382 AGTGEFEAGISKNGQ 426
           AGTGEFEAGISKNGQ
Sbjct: 61  AGTGEFEAGISKNGQ 75


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  126 bits (303), Expect = 1e-31
 Identities = 58/59 (98%), Positives = 58/59 (98%)
 Frame = +1

Query: 250 DIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 426
           DIALWKFET KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 59


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 33.1 bits (72), Expect = 0.001
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +1

Query: 289 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 393
           VT +D PGH  FI     G    D  VL+VAA  G
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDG 229


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 274 TGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 375
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 274 TGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 375
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 57  RFTYIAHRTRHSASH 101
           +F  + HR RHS  H
Sbjct: 187 QFRVLGHRQRHSTIH 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,873
Number of Sequences: 438
Number of extensions: 2616
Number of successful extensions: 35
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)