Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_G18
(369 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 33 0.014
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 31 0.075
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 0.93
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 26 2.1
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 3.7
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 25 4.9
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ... 25 4.9
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 24 6.5
SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces pombe... 24 6.5
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 24 6.5
SPAC664.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 24 6.5
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 33.1 bits (72), Expect = 0.014
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = -2
Query: 266 VSIKLFRFIQHNIDQLIPTICKSLV 192
+SI++F F+ NI ++PT CKSLV
Sbjct: 271 LSIRIFPFVAENIFNVLPTTCKSLV 295
>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 266
Score = 30.7 bits (66), Expect = 0.075
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 90 VSDLADAAKLKSKNYHLIVDEYEPDTFDAIRHRINQRFTN 209
+SDL K +SKN+H++ Y +A R ++ R+ N
Sbjct: 217 LSDLDSIYKRESKNWHIVSQFYNMLELEAARQKLENRYLN 256
>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 841
Score = 27.1 bits (57), Expect = 0.93
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 66 VVEVYIDGVSDLADAAKLKSKNYHLIVDEYEPDTFDAIRHRINQ 197
VV+ I S + DAAK + N DE+ + IR+ +N+
Sbjct: 57 VVQSQIAKASPIVDAAKQATVNVKSYYDEHAKPKVENIRYEVNE 100
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 25.8 bits (54), Expect = 2.1
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +3
Query: 3 TRENSEWNGLMITDPFNTPEAVVEVYIDGVSDLADAAK 116
TR+ +W+G++ + NT +V+V++ + D A+
Sbjct: 993 TRQTFQWHGVLKKNLRNTIRNIVKVFLTTLGACGDVAR 1030
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 3.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 204 TNGGNKLINIMLNEPEKFNTYSNVF 278
+ GG++++N +L E + N+ NVF
Sbjct: 613 SGGGDRVVNQLLTEMDGVNSKKNVF 637
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 24.6 bits (51), Expect = 4.9
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +3
Query: 150 EYEPDTFDAIRHRINQRFTNGGNKLINIMLNEPEKFNTYSNVFGY 284
E E FD + +N + N KL N +F+ Y+N+ +
Sbjct: 440 EIEQPDFDVVLENLNLQTANVLPKLAEFRNNNFVRFSPYANITSF 484
>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 429
Score = 24.6 bits (51), Expect = 4.9
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 186 RINQRFTNGGNKLINIMLNEPEKFNTYSNVFG 281
+I R GG IN+++++ + FN Y +FG
Sbjct: 265 KIMSRSFKGG---INVVVSDLQMFNEYKRIFG 293
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 24.2 bits (50), Expect = 6.5
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +3
Query: 21 WNGLMITDPFNTPEAVVEVYIDGVSDLA 104
W + D PEA+ + Y + V+D+A
Sbjct: 565 WVFKTVQDDHEVPEAITDAYREQVNDMA 592
>SPAC16.03c |ura2||dihydroorotase Ura2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 337
Score = 24.2 bits (50), Expect = 6.5
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +3
Query: 45 PFNTPEAVVEVYIDGVSDLADAAKLKSKNYHLIVDEYEP--DTFDAIR 182
P TPE + E G+ + K + N V+ YEP TF A++
Sbjct: 76 PETTPEVIYEAAKKGIRGVKSYPKGATTNSESGVESYEPFYPTFAAMQ 123
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 24.2 bits (50), Expect = 6.5
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 228 NIMLNEPEKFNTYSNVFGYIPVPKVTKQSFQHLKYSVEEDYQFL 359
N+ +NE KFN F + K S + S +ED Q L
Sbjct: 6 NVSVNEQGKFNDKEEGFSNLKSLKHVSHSETDFEVSNDEDNQLL 49
>SPAC664.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 117
Score = 24.2 bits (50), Expect = 6.5
Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 96 DLADAAKLK-SKNYHLIVDEYEPDTFDAIRHRINQRFTN 209
++A+AA+ + S N ++VDEY ++ D + + + +N
Sbjct: 20 EIAEAAEARNSSNSLIVVDEYSKESEDVLENGLEHVQSN 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,457,123
Number of Sequences: 5004
Number of extensions: 27701
Number of successful extensions: 93
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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