Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G18
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1632 + 28386956-28387042,28387120-28387185,28387354-283874...    27   3.5  
06_01_1180 + 10141850-10141959,10142096-10142621                       27   3.5  
02_02_0268 + 8422024-8422623                                           27   3.5  
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774...    27   6.1  
08_01_0407 - 3613417-3613506,3613603-3613713,3613789-3613857,361...    26   8.1  
04_04_1267 - 32257035-32257337,32257423-32257570,32257656-322578...    26   8.1  
02_01_0139 - 1008675-1008752,1008828-1008905,1009176-1009227,100...    26   8.1  

>08_02_1632 +
           28386956-28387042,28387120-28387185,28387354-28387449,
           28387534-28387609,28387884-28387972,28388041-28388133,
           28390389-28390526,28390709-28390814,28391521-28391627
          Length = 285

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 6   RENSEWNGLMITDPFNTPEAVVEVYIDGVSDLAD 107
           + +S+ + L++ +PF+ P AV  + IDG  D  D
Sbjct: 79  QSSSKLDKLLLPNPFDRPRAVFLLQIDGFHDKDD 112


>06_01_1180 + 10141850-10141959,10142096-10142621
          Length = 211

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 111 AKLKSKNYHLIVDEYEPDTFDAIRHRINQRFTN--GGNKLINIMLNEPE 251
           AK+    YH +   +  +   AI   +N   T+  GG K++N+ + E +
Sbjct: 43  AKVALLLYHAVAAHFSEEALKAINGEVNTLATDGGGGGKVLNLTIEEDD 91


>02_02_0268 + 8422024-8422623
          Length = 199

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -2

Query: 116 FCSICKVRYSIYIYFNYSF--WS 54
           F ++C V Y + +YFNY +  WS
Sbjct: 39  FTAVCLVLYGVILYFNYLYVRWS 61


>11_04_0007 -
           12074472-12074538,12074908-12075116,12077202-12077463,
           12077547-12078043,12078651-12078719,12079258-12079363,
           12080272-12080295,12081184-12081242,12081383-12081520
          Length = 476

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 42  DPFNTPEAVVEVYIDGVSDLADAAK 116
           DP +  +A+V++Y+D   DL   AK
Sbjct: 90  DPASFSDAIVQIYLDNAGDLELVAK 114


>08_01_0407 -
           3613417-3613506,3613603-3613713,3613789-3613857,
           3613936-3614091,3614156-3614222,3614375-3614470,
           3614976-3615142
          Length = 251

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = +3

Query: 42  DPFNTPEAVVEVYIDGVSDL-----ADAAKLKSKNYHLIVDEYEPD 164
           DP ++P   V VY DG+ DL     A A +   K++   VDE  PD
Sbjct: 22  DPLSSPGRPVRVYADGIYDLFHFGHARALEQAKKSW---VDEVIPD 64


>04_04_1267 -
           32257035-32257337,32257423-32257570,32257656-32257893,
           32257994-32258351,32258791-32258969,32259071-32259175,
           32259539-32260871
          Length = 887

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 138 LIVDEYEPD-TFDAIRHRINQRFTNGGNKLINIMLNEPEKFNTYSNVFGYIPVPKVTKQS 314
           L++ EY P+ + +A      Q+ T   NKL + ML + E          Y+ +PK   + 
Sbjct: 593 LLIYEYLPNKSLEAFIFGTVQKHTMRSNKL-HSMLTDREILLFLKK---YLKIPKFYTKI 648

Query: 315 FQHLKYSVEED 347
           F  L+Y V ED
Sbjct: 649 FGTLRYLVSED 659


>02_01_0139 -
           1008675-1008752,1008828-1008905,1009176-1009227,
           1009369-1009437,1009594-1009652,1009757-1009828,
           1009945-1010038,1010311-1010356,1010510-1010609,
           1010847-1011200,1011362-1011460,1011548-1011595,
           1011679-1011816
          Length = 428

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 15/55 (27%), Positives = 22/55 (40%)
 Frame = +3

Query: 111 AKLKSKNYHLIVDEYEPDTFDAIRHRINQRFTNGGNKLINIMLNEPEKFNTYSNV 275
           AKL    +HL+ D Y  +T  A+ HRI +       +  N       +   Y  V
Sbjct: 334 AKLSYLEHHLLRDTYTKETVPAL-HRIRKYLVEATKEASNSYTEAVSRLREYQGV 387


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,643,174
Number of Sequences: 37544
Number of extensions: 152534
Number of successful extensions: 354
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)