Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G18
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-34|AAY43986.1|  308|Caenorhabditis elegans Hypothetical...    29   1.4  
AC006607-4|AAK68171.1|  309|Caenorhabditis elegans Serpentine re...    28   2.4  
Z29116-4|CAA82370.2|  206|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z78198-10|CAB01568.1|  569|Caenorhabditis elegans Hypothetical p...    27   4.2  
CU457741-9|CAM36350.2|  252|Caenorhabditis elegans Hypothetical ...    27   4.2  
AF083654-1|AAC32865.1|  569|Caenorhabditis elegans putative pota...    27   4.2  
AL031627-11|CAA20962.2|  355|Caenorhabditis elegans Hypothetical...    27   5.5  
AF143900-1|AAF66677.1|  284|Caenorhabditis elegans thioredoxin-l...    27   5.5  
AF143405-1|AAF66636.1|  284|Caenorhabditis elegans thioredoxin-l...    27   5.5  
AC024810-17|AAF60759.1|  284|Caenorhabditis elegans Hypothetical...    27   5.5  
Z83246-2|CAB05841.1|  292|Caenorhabditis elegans Hypothetical pr...    26   7.3  
AC024845-2|AAF60851.1|  324|Caenorhabditis elegans Hypothetical ...    26   9.7  

>AC025726-34|AAY43986.1|  308|Caenorhabditis elegans Hypothetical
           protein Y71G12B.30 protein.
          Length = 308

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 10/50 (20%)
 Frame = -2

Query: 128 LRFQFCSICKVRYSIYIY--FNYSFWSVER--------VCDHKSIPFGIL 9
           +++ F + CK RYS+ +Y  F ++F+ +          +C H  IPFG+L
Sbjct: 144 MQYGFYNECKRRYSVTLYETFQWAFYCMPLCAIVGGRIMCMHGGIPFGLL 193


>AC006607-4|AAK68171.1|  309|Caenorhabditis elegans Serpentine
           receptor, class xa protein5 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -2

Query: 140 QVIVLRFQFCSICKVRYSIY 81
           + I+L+F+FC +C + + +Y
Sbjct: 254 RTIILQFRFCIVCSINFLVY 273


>Z29116-4|CAA82370.2|  206|Caenorhabditis elegans Hypothetical
           protein ZK507.4 protein.
          Length = 206

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 104 CKVRYSIYIYFNYSFWSVERVCDHKSI 24
           C   +  Y+Y+    W+ E++ +H+SI
Sbjct: 45  CATFHENYVYYCRGIWTAEKLLEHRSI 71


>Z78198-10|CAB01568.1|  569|Caenorhabditis elegans Hypothetical
           protein F55C5.3a protein.
          Length = 569

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 42  DPFNTPEAVVEVYIDGVSDLADAAKLKSKNYHLIVDEYEPDTFDAIRHRINQRFTNGGNK 221
           DP     ++VE   +GV  L  +  L+ +   L VDE++      ++ RI Q + +  +K
Sbjct: 463 DPHVATMSIVEDEEEGVKRLIQSQSLEDRIIFLFVDEHKK---SMLKERITQTYPSKADK 519

Query: 222 LI 227
            +
Sbjct: 520 YV 521


>CU457741-9|CAM36350.2|  252|Caenorhabditis elegans Hypothetical
           protein C42C1.9 protein.
          Length = 252

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 129 NYHLIVDEYEPDTFDAIRHRINQRFTN-GGNKLINIMLNEPEKFNTYSNVFGYIPVP 296
           +Y  I ++Y+  T+  +R + + +  N   + +I   LN  +   TY + +G  P+P
Sbjct: 55  DYDQISEDYDFVTYALLREKRSSKNNNMKTSHVITSTLNTEKSLETYLDEYGKFPLP 111


>AF083654-1|AAC32865.1|  569|Caenorhabditis elegans putative
           potassium channel subunitn2P24 protein.
          Length = 569

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 42  DPFNTPEAVVEVYIDGVSDLADAAKLKSKNYHLIVDEYEPDTFDAIRHRINQRFTNGGNK 221
           DP     ++VE   +GV  L  +  L+ +   L VDE++      ++ RI Q + +  +K
Sbjct: 463 DPHVATMSIVEDEEEGVKRLIQSQSLEDRIIFLFVDEHKK---SMLKERITQTYPSKADK 519

Query: 222 LI 227
            +
Sbjct: 520 YV 521


>AL031627-11|CAA20962.2|  355|Caenorhabditis elegans Hypothetical
           protein Y102A5C.21 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -2

Query: 188 PMSDGIKCIRFILIHNQVIVLRFQFCSICKVRYSIYIY 75
           P++  I  I  ++ H+  ++L F FC++C +   + +Y
Sbjct: 56  PIAMKISKIPLLINHSLCVILDFVFCTLCTLYIFVPMY 93


>AF143900-1|AAF66677.1|  284|Caenorhabditis elegans thioredoxin-like
           protein protein.
          Length = 284

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 30  LMITDPFNTPEAVVEVYIDGVSDLA 104
           L+I+ PFN P  V  + I GVSD A
Sbjct: 159 LIISLPFNQPVKVHSILIKGVSDRA 183


>AF143405-1|AAF66636.1|  284|Caenorhabditis elegans thioredoxin-like
           protein TXL protein.
          Length = 284

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 30  LMITDPFNTPEAVVEVYIDGVSDLA 104
           L+I+ PFN P  V  + I GVSD A
Sbjct: 159 LIISLPFNQPVKVHSILIKGVSDRA 183


>AC024810-17|AAF60759.1|  284|Caenorhabditis elegans Hypothetical
           protein Y54E10A.3 protein.
          Length = 284

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 30  LMITDPFNTPEAVVEVYIDGVSDLA 104
           L+I+ PFN P  V  + I GVSD A
Sbjct: 159 LIISLPFNQPVKVHSILIKGVSDRA 183


>Z83246-2|CAB05841.1|  292|Caenorhabditis elegans Hypothetical
           protein ZK795.3 protein.
          Length = 292

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +3

Query: 147 DEYEPDTFDAIRHRINQRFTNGGNKLINIMLNEPEKFNTYSNVFGYIPVPKVTKQSFQHL 326
           ++Y    FD +  ++  RFT     L  +   + ++  T+SN   YI        SF+H 
Sbjct: 176 EQYPHLIFDNLNSKLGHRFTTILKHLFPVPKPDSKRIITFSNSEDYI--------SFRHH 227

Query: 327 KYSVEED 347
            Y  E D
Sbjct: 228 VYKTEND 234


>AC024845-2|AAF60851.1|  324|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.4 protein.
          Length = 324

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 125 RFQFCSICKVRYSIYIYFNYSFW 57
           R  F  I  V +++YIYF Y FW
Sbjct: 191 RLSFLPIILV-WAVYIYFLYGFW 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,849,479
Number of Sequences: 27780
Number of extensions: 150403
Number of successful extensions: 431
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)