Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G17
         (264 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    29   0.14 
SPCC338.04 |cid2||caffeine induced death protein Cid2|Schizosacc...    25   1.3  
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|...    25   1.7  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    25   2.3  
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   2.3  
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo...    24   3.0  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    24   3.0  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    24   4.0  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    23   5.3  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    23   5.3  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    23   9.2  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    23   9.2  

>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 28.7 bits (61), Expect = 0.14
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
 Frame = -3

Query: 205 TLQNTMKLRPEYSFADHKH*EPTTGSYNPRNKKTRVLIS*SSNQ-PINHVRQHIDDNK-- 35
           TL++T+KLRP+++ A  +H   T  +    +  T   I+  S Q  I  V +   D++  
Sbjct: 27  TLEDTLKLRPDWTIALSQHETETRSTRTSCSTTTESTIAMRSKQKAIISVLEEFRDSEAA 86

Query: 34  -LSDLHV 17
            + DLHV
Sbjct: 87  YVHDLHV 93


>SPCC338.04 |cid2||caffeine induced death protein
           Cid2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 167

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 14/67 (20%), Positives = 33/67 (49%)
 Frame = -1

Query: 219 RECTTHYKTP*SYDPNTHLLITSTRNRLPEATTQEIRKHVC*SANQATNQLTTYDNI*MI 40
           +EC T  ++    D NT      ++ +LP ++T ++ + +   A +   QL+  + + ++
Sbjct: 72  KECQTIVRSQLDQDRNTSKSPLKSQQQLPSSSTTQVSERLDPYAKEVQVQLSPPEEVQIV 131

Query: 39  TNSLTSM 19
             S  S+
Sbjct: 132 LQSELSV 138


>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 277

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 2   HEGSPDMEVREFVIIYMLSYV 64
           H+G  D EV EFV  YM  YV
Sbjct: 226 HKGMSDEEVIEFVNHYMPQYV 246


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 85  SSNQPINHVRQHIDD 41
           SSNQP N  +QH DD
Sbjct: 103 SSNQPTNVYKQHQDD 117


>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 151

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 85 SSNQPINHVRQHIDDNKLSDLHVRRTL 5
          S +  IN +R    DN + D HV R +
Sbjct: 6  SISSKINRIRDPESDNTIEDTHVARVM 32


>SPBC19F8.02 |||nuclear distribution protein NUDC
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 226 EKKRMYDTLQNTMKLRPEYSFAD 158
           E+KR  D LQN MK  PE  F++
Sbjct: 140 EQKRK-DVLQNFMKQHPELDFSN 161


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 162 LITSTRNRLPEATTQEIRKHVC*SANQATNQLTTY 58
           L+  T  RL E   +EIRK      NQ +N  TTY
Sbjct: 102 LVKETHARL-EQRLEEIRKRNQSRKNQMSNNSTTY 135


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 23.8 bits (49), Expect = 4.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 206 HTTKHHEATTRILI 165
           HTT H E TT++LI
Sbjct: 183 HTTTHGELTTKLLI 196


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -1

Query: 174  NTHLLITSTRNRLPEATTQEIRKHVC*SANQATNQLTTYD 55
            N H  +T T   + EA  + +      S  QAT+ +  +D
Sbjct: 994  NVHFNVTLTEAGMKEALNESLEVKFKLSRTQATSNMIAFD 1033


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 180 RSFMVFCSVSYILFFSLIWILPCVSMY 260
           RS  +   VS+I+FF L+ I+P + MY
Sbjct: 552 RSLRIGIFVSWIIFFILVIIVP-LPMY 577


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 186 FMVFCSVSYILFFSLIWILPCVSMYV 263
           F+   ++SYI F SLI I  C + ++
Sbjct: 140 FVKIIALSYICFSSLIRICHCWTYFI 165


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 262 TYIETHGRIHIREKKRMYDTLQNTMKLRPE 173
           T ++T  +IH+R+ K M   L    +L+PE
Sbjct: 678 TALQTE-KIHVRDAKTMPPLLLKLSELQPE 706


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,089,130
Number of Sequences: 5004
Number of extensions: 18051
Number of successful extensions: 62
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)