Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G17
         (264 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498...    27   2.7  
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208...    27   2.7  
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    26   3.6  
02_05_0478 - 29343548-29343682,29343831-29343833,29344261-293444...    26   3.6  
11_04_0279 + 15722183-15722273,15722927-15722986,15724053-157243...    26   4.8  
01_05_0133 + 18452032-18452061,18452703-18452849,18452925-184532...    25   8.3  

>04_04_0468 - 25447774-25447945,25449016-25449130,25449541-25449877,
            25450299-25450628,25451090-25451362,25451471-25451929,
            25452307-25452516,25452617-25452828,25453304-25453404,
            25453584-25454008,25454167-25454360,25454436-25454701,
            25454809-25455015,25455121-25455281,25455741-25455933,
            25456158-25456251,25457238-25457373,25458074-25458202,
            25458315-25458449,25458549-25458613,25459875-25459950,
            25460775-25460885,25461194-25461371,25462340-25462434
          Length = 1557

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -1

Query: 129  ATTQEIRKHVC*SANQATNQLTTYDNI*MITNSLTSMSGEPSC 1
            A  + I KH+   +N  T+ ++ ++    ++NS   +  EP+C
Sbjct: 1196 AVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEPAC 1238


>03_01_0270 -
           2085461-2086205,2086260-2086339,2086598-2086690,
           2086774-2086881,2087012-2087101,2087234-2087275,
           2087516-2087587,2090848-2090985,2091074-2092624
          Length = 972

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = -3

Query: 229 REKKRMYDTLQNTMKLRPEYSFADHKH*EPTTGSYNPRNKKT 104
           + +++ ++T ++       YS   ++  E   G Y+PR +KT
Sbjct: 341 KSRRKHFETDRHRTSWNDGYSSGSYRRYESRLGGYSPRKRKT 382


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 187 KLRPEYSFADHKH*EPTTGSY 125
           K  P+Y  +D KH  P TGSY
Sbjct: 769 KDEPDYILSDRKHDLPFTGSY 789


>02_05_0478 -
           29343548-29343682,29343831-29343833,29344261-29344401,
           29344496-29344638,29345004-29345161,29345261-29345342,
           29345506-29345603,29345726-29345880,29346200-29346283,
           29346541-29346681
          Length = 379

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -3

Query: 262 TYIETHGRIHIREKKRMYDTLQNTMKLRPEYSFADHKH*EPTTG 131
           TY+E    + ++E+ R+YD L+    L+P  S ++    E T+G
Sbjct: 284 TYLEEVKNLLLQERDRLYDLLKEIPFLKPFPSHSNFILCEVTSG 327


>11_04_0279 +
           15722183-15722273,15722927-15722986,15724053-15724318,
           15724771-15724886,15725173-15725246,15725330-15725393,
           15725473-15725509
          Length = 235

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 35  FVIIYMLSYVVNWLVA*LAD*HTCFLISWV 124
           F+  Y + Y++NW+     + H    ISWV
Sbjct: 176 FLGAYRVLYILNWIYRYFTEPHFVHWISWV 205


>01_05_0133 +
           18452032-18452061,18452703-18452849,18452925-18453257,
           18453331-18453516,18453600-18453635,18453816-18453940,
           18454016-18454091,18454165-18454266
          Length = 344

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 171 THLLITSTRNRLPEATTQEIRKHVC*SANQATNQLTTYDNI*MI 40
           THL ++ + N +      EI + V   AN+ T     +DNI M+
Sbjct: 7   THLKVSGSLNNIQFDLPVEIVEKVNHFANEVTEMRRGFDNILMV 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,809,109
Number of Sequences: 37544
Number of extensions: 105592
Number of successful extensions: 217
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)