Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G17
         (264 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98877-1|CAB11569.2|  343|Caenorhabditis elegans Hypothetical pr...    29   0.60 
AL117195-5|CAB55012.1|  732|Caenorhabditis elegans Hypothetical ...    27   1.8  
Z81046-5|CAB02823.1|  225|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z81083-3|CAB03104.1|  559|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z46381-9|CAI58660.1|  807|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z46381-8|CAA86517.2|  808|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AF078157-10|AAG24074.1|  377|Caenorhabditis elegans Hypothetical...    25   5.6  
AF067211-3|ABC71845.1|  720|Caenorhabditis elegans Hypothetical ...    25   5.6  
AF067211-2|AAC16990.3|  745|Caenorhabditis elegans Hypothetical ...    25   5.6  
Z81570-1|CAB04606.1|  749|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U53338-3|AAA96191.1|  534|Caenorhabditis elegans Ammonium transp...    25   7.4  
AY887910-1|AAX34422.1|  749|Caenorhabditis elegans anion transpo...    25   7.4  
AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical...    25   7.4  
AF100664-2|AAC68984.1|  665|Caenorhabditis elegans Hypothetical ...    25   9.8  

>Z98877-1|CAB11569.2|  343|Caenorhabditis elegans Hypothetical
           protein Y69H2.1 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 180 RSFMVFCSVSYILFFSLIWILPCVSM 257
           RS   FC+  Y+  FS I+++P VSM
Sbjct: 278 RSVNYFCAYGYMFSFSCIFMVPLVSM 303


>AL117195-5|CAB55012.1|  732|Caenorhabditis elegans Hypothetical
           protein Y57A10A.7 protein.
          Length = 732

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -3

Query: 256 IETHGRIHIREKKRM--YDTLQNTMKLRPEYSFADHKH*EPTTGSYNPRNKKTRVLIS 89
           I+T G +H+ EKKR+  Y T    +KL  ++S   H       G+Y  R K  R  IS
Sbjct: 348 IQTIGTVHLDEKKRICKYATHDGKLKLEGDHS---HTARMLRRGAYYRRLKTGRKSIS 402


>Z81046-5|CAB02823.1|  225|Caenorhabditis elegans Hypothetical
           protein C37E2.2a protein.
          Length = 225

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +3

Query: 186 FMVFCSVSYILFFSLIWILPCVSMY 260
           F+ F  + Y+ FF   W+ P +S++
Sbjct: 151 FVYFMIICYVRFFDGYWLYPILSLF 175


>Z81083-3|CAB03104.1|  559|Caenorhabditis elegans Hypothetical
           protein F44F1.4 protein.
          Length = 559

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 229 REKKRMYDTLQNTMK 185
           RE+K+ YD L+NT+K
Sbjct: 479 REEKKQYDILKNTLK 493


>Z46381-9|CAI58660.1|  807|Caenorhabditis elegans Hypothetical
           protein M01F1.4b protein.
          Length = 807

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 207 SYILFFSLIWILPCVSMY 260
           S+I+FF+  W+LP + +Y
Sbjct: 153 SFIVFFARPWVLPLIIVY 170


>Z46381-8|CAA86517.2|  808|Caenorhabditis elegans Hypothetical
           protein M01F1.4a protein.
          Length = 808

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 207 SYILFFSLIWILPCVSMY 260
           S+I+FF+  W+LP + +Y
Sbjct: 154 SFIVFFARPWVLPLIIVY 171


>AF078157-10|AAG24074.1|  377|Caenorhabditis elegans Hypothetical
           protein F25E5.3 protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 18/80 (22%), Positives = 35/80 (43%)
 Frame = -3

Query: 259 YIETHGRIHIREKKRMYDTLQNTMKLRPEYSFADHKH*EPTTGSYNPRNKKTRVLIS*SS 80
           YI+ H R++  E K++  T     + + +    +     P  GS N     +  +IS   
Sbjct: 21  YIKEHARLNSTENKQLQATCGRNTRYQMKTLDGERSIESPWAGSVNIYGILSSTVISPRH 80

Query: 79  NQPINHVRQHIDDNKLSDLH 20
               N ++ ++D  K+S L+
Sbjct: 81  ILLFNLIQLNVDTLKMSILN 100


>AF067211-3|ABC71845.1|  720|Caenorhabditis elegans Hypothetical
           protein B0205.1b protein.
          Length = 720

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 256 IETHGRIHIREKKRMYDTLQNTMKL 182
           IETHG + + EK+R+     N  KL
Sbjct: 331 IETHGTVELDEKRRIRKYTSNDGKL 355


>AF067211-2|AAC16990.3|  745|Caenorhabditis elegans Hypothetical
           protein B0205.1a protein.
          Length = 745

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 256 IETHGRIHIREKKRMYDTLQNTMKL 182
           IETHG + + EK+R+     N  KL
Sbjct: 356 IETHGTVELDEKRRIRKYTSNDGKL 380


>Z81570-1|CAB04606.1|  749|Caenorhabditis elegans Hypothetical
           protein K12G11.1 protein.
          Length = 749

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 118 LGCSFR*SVPSACDQQMSIRVVASWCFVVCRTFSSSLLYGFYRVFL 255
           +  SF  S+P++C    ++  V + C      F SSL+     +FL
Sbjct: 417 ISSSFIPSIPNSCSLSRTLVAVGAGCTTQLSIFFSSLIVFSVVIFL 462


>U53338-3|AAA96191.1|  534|Caenorhabditis elegans Ammonium
           transporter homolog protein1 protein.
          Length = 534

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -3

Query: 190 MKLRPEYSFADHKH*EPTTGSYNPRNKKTRVLIS*SSNQPINHVRQHIDDNKL 32
           MK+ PE S          +G+  P  KK+R L + S+ + ++ +    D+NK+
Sbjct: 484 MKIHPEMSIEQLASVYDRSGNIIPMPKKSRTLFTNSAERKMSQMM--YDENKM 534


>AY887910-1|AAX34422.1|  749|Caenorhabditis elegans anion
           transporter SULP-4 protein.
          Length = 749

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 118 LGCSFR*SVPSACDQQMSIRVVASWCFVVCRTFSSSLLYGFYRVFL 255
           +  SF  S+P++C    ++  V + C      F SSL+     +FL
Sbjct: 417 ISSSFIPSIPNSCSLSRTLVAVGAGCTTQLSIFFSSLIVFSVVIFL 462


>AF003139-11|AAK73871.1| 1503|Caenorhabditis elegans Hypothetical
            protein F53G12.3 protein.
          Length = 1503

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = +3

Query: 171  YSGRSFMVFC--SVSYILFFSLIW 236
            Y    F++FC  +++ +LFF L W
Sbjct: 990  YRQHVFIIFCFVAINIVLFFELFW 1013


>AF100664-2|AAC68984.1|  665|Caenorhabditis elegans Hypothetical
           protein M57.1 protein.
          Length = 665

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 256 IETHGRIHIREKKRMYDTLQNTMKLRPEYSFADHKH*EPTTG 131
           IETHG + + +K+R+   + N    + E     H   +P TG
Sbjct: 215 IETHGTVQLDDKRRITKYVSNDGNFKLE-GIRRHIMSKPATG 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,048,225
Number of Sequences: 27780
Number of extensions: 101651
Number of successful extensions: 288
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,740,198
effective HSP length: 66
effective length of database: 10,906,718
effective search space used: 229041078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)