Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G17
         (264 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   1.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   4.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   4.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   5.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    20   5.9  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    20   5.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    19   7.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 1.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 90  ANQATNQLTTYDNI*MITNSLTSMSGEPSC 1
           A+   +QL  Y ++  ITN     SG+ +C
Sbjct: 660 ASANISQLDPYSSLLSITNLAAEHSGDYTC 689


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 216 LFFSLIWILPCVSM 257
           LF+++  I+PCVS+
Sbjct: 236 LFYTVNLIVPCVSI 249


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -1

Query: 150 TRNRLPEATTQEIRKHVC*SANQATNQLTTYDNI*MITNSLTSM 19
           T + +  + T +I  H+   A+ ++      DN+ MIT  L  +
Sbjct: 335 TLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGL 378



 Score = 19.8 bits (39), Expect = 5.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 233 YKREEENVRHTTKHHE 186
           YK EE N  +  +H E
Sbjct: 179 YKEEESNENYNWEHKE 194


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = +3

Query: 51  CCRTWL 68
           CCR+WL
Sbjct: 400 CCRSWL 405


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = +3

Query: 51  CCRTWL 68
           CCR+WL
Sbjct: 400 CCRSWL 405


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 45  SICCRTWLIG 74
           +ICC+T +IG
Sbjct: 342 TICCKTRIIG 351


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 85  SSNQPINHVRQHIDDNKLSDLHVRRTL 5
           SSN P N  +   +++  S  H+R  L
Sbjct: 107 SSNDPKNQYKNQNNNHYTSHQHLRTHL 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,285
Number of Sequences: 438
Number of extensions: 1135
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4887441
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)