Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_G15
(492 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 100 5e-22
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 97 5e-21
03_05_0412 + 23993452-23994068,23996249-23996350,23996799-239969... 30 1.2
07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331 29 2.0
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 28 3.5
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251 27 6.2
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226... 27 6.2
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 100 bits (240), Expect = 5e-22
Identities = 67/152 (44%), Positives = 80/152 (52%), Gaps = 2/152 (1%)
Frame = +2
Query: 41 RPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVILTSTK 220
R ++TPGTV ILLAGR GKR TGPF N P+RR+ Q YVI TSTK
Sbjct: 95 RSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVTGPFKINGVPIRRVNQPYVIATSTK 154
Query: 221 VDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKE--KYVPSEQRKADQKLVD 394
VD+ + DD YF +GE +F T+KE K +P E +K DQK+VD
Sbjct: 155 VDISGVNV-EKFDDKYF---SRDKKQKAKKTEGE-LFETEKEATKNLP-EFKKEDQKVVD 208
Query: 395 EAVIKAIRLRPDKKTLRGYLRASFGLRSSQFP 490
+IKAI PD KT YL A F LR P
Sbjct: 209 AELIKAIEAVPDLKT---YLGARFSLRDGDKP 237
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 97.5 bits (232), Expect = 5e-21
Identities = 65/154 (42%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Frame = +2
Query: 35 RTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVILTS 214
+ R +TPGTV ILLAGR+ GKR TGPF N P+RR+ Q YVI TS
Sbjct: 70 KLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIATS 129
Query: 215 TKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKE--KYVPSEQRKADQKL 388
TKVD+ K+ DD YF +GE +F T+KE K +P + +K DQK
Sbjct: 130 TKVDISGVKVD-KFDDKYF---ARDKKAKAKKTEGE-LFETEKEATKNLP-DFKKDDQKA 183
Query: 389 VDEAVIKAIRLRPDKKTLRGYLRASFGLRSSQFP 490
VD +IKAI + PD L+ YL G R+S++P
Sbjct: 184 VDAELIKAIEVVPD---LKSYL----GARNSRWP 210
>03_05_0412 +
23993452-23994068,23996249-23996350,23996799-23996994,
23997075-23997259,23997394-23997498,23997625-23997722,
23997832-23998067,23998314-23998382,23999768-23999833,
24000513-24000611,24000688-24000750
Length = 611
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 195 RCGILRRGHALKAKGPVKSSRPLGNTPTSTT 103
RCG+ ++GH A GP + P ++ +TT
Sbjct: 23 RCGLPKKGHVCAAGGPAPTPSPSSSSGAATT 53
>07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331
Length = 599
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 150 PVKSSRPLGNTPTSTTRLPACLPANRMHTVPGVRLGLVLRTCLL 19
P ++ P+ +TP+ T + CLPA+R T R +LR L+
Sbjct: 258 PTWTTSPILSTPSHTWQRSLCLPASRSFTPRKSRRDQLLRLALV 301
>02_01_0356 +
2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 129 LGNTPTSTTRLPACLPANRMHTVPGVRLGLVLRTCLLKPSC 7
L +T + +L L +N H V G LG+ + TC +K C
Sbjct: 430 LWDTDSGLAQLDKYLHSNDAHVVAGALLGIGIVTCGVKNDC 470
>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
Length = 1821
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -1
Query: 150 PVKSSRPLGNTPTSTTRLPACLPANRMHTVPGVRLG 43
P+KS+ P GN TTRL + A R+ TV + LG
Sbjct: 440 PLKSNHPKGNMILVTTRLLSL--AQRIGTVKPIELG 473
>02_05_0902 +
32620668-32621209,32621847-32622258,32622471-32622675,
32622712-32622806,32622945-32623557,32623652-32623820,
32624392-32624749,32625226-32625336,32626207-32626561,
32627262-32627484,32627837-32628058,32628628-32628781
Length = 1152
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +2
Query: 329 FATKKEKYVPSEQRKADQKLVDEAVI----KAIRLRPDKKTLRGYLRASFGLRSS 481
FA ++K ++ +KA + E I KA+ L PD + L YL ++G R S
Sbjct: 314 FARFQDKVASTQPQKAARLQTTERKISILEKAVELNPDNEELLLYLLKAYGERDS 368
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,440,311
Number of Sequences: 37544
Number of extensions: 229087
Number of successful extensions: 680
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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